View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13254_low_75 (Length: 328)
Name: NF13254_low_75
Description: NF13254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13254_low_75 |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 43440550 - 43440229
Alignment:
| Q |
1 |
gaggtttaattcctaatgaacattgtcatcttttcttagaaactagaaggctaccataannnnnnnaataaagctatatatgcaccgtgtcttgtaaaaa |
100 |
Q |
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| T |
43440550 |
gaggtttaattcctaatgaacatagtcatcttttcttagaaactagaaggctaccataatttttttaataaaactatatatgcaccgtgtcttgtaaaaa |
43440451 |
T |
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| Q |
101 |
acagtgtgagattattgatatatgcaattcttttaattaacaaagaa------------atagactaatggcctgtttgg-tagcatggtagaattgaga |
187 |
Q |
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| T |
43440450 |
acagtgtgagatgattgatatatgcaattcttttaattaacaaagaagattttatataaatagactaatggcctgtttgcctagcatggtagaattgaga |
43440351 |
T |
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| Q |
188 |
aaagcacggcagcaaatcaacgcaacgttaaagctataaaacccagcttcacaattttgatgattggagtgcattgggaagtgatattttaacgtgatgt |
287 |
Q |
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| T |
43440350 |
aaagcacggcagcaaatcaccgcaacgttaaagctataaaacccagtttcacaattttgatgattggagtgcattgggaaatgatattttaacaagatgt |
43440251 |
T |
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| Q |
288 |
ggtttcaaaatcatatccaaac |
309 |
Q |
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| T |
43440250 |
ggttttaaaatcatatccaaac |
43440229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 154 - 309
Target Start/End: Original strand, 11051701 - 11051858
Alignment:
| Q |
154 |
taatggcctgtttggtagcatggtagaattgagaaaagcacggcagcaaatcaacgc-aacgttaaagctataaaaccc-agcttcacaattttgatgat |
251 |
Q |
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| T |
11051701 |
taatggtctgtttggtagctcggtagaattgagaaaagcacggcagcaaatcacagccaacactaaagtttcaaaaccccaacttcataattttgaggac |
11051800 |
T |
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| Q |
252 |
tggagtgcattgggaagtgatattttaacgtgatgtggtttcaaaatcatatccaaac |
309 |
Q |
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| T |
11051801 |
tacagtgtattgggaagtggtattttaacgtgatgtggtttcaaaatcatatccaaac |
11051858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 121; Significance: 6e-62; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 153 - 309
Target Start/End: Complemental strand, 34123122 - 34122966
Alignment:
| Q |
153 |
ctaatggcctgtttggtagcatggtagaattgagaaaagcacggcagcaaatcaacgcaacgttaaagctataaaacccagcttcacaattttgatgatt |
252 |
Q |
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| T |
34123122 |
ctaatggcctgtttggtagcacggtagaattgagaaaagcacagcagcaaatcacggcaacgctaaagcttcaaaacccagcttcacaattttgaggatt |
34123023 |
T |
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| Q |
253 |
ggagtgcattgggaagtgatattttaacgtgatgtggtttcaaaatcatatccaaac |
309 |
Q |
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| T |
34123022 |
ggagtgcattggaaagtgatattttaacgtgatgtggtttcaaaatcatatccaaac |
34122966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 156 - 309
Target Start/End: Original strand, 48957585 - 48957738
Alignment:
| Q |
156 |
atggcctgtttggtagcatggtagaattgagaaaagcacggcagcaaatcaacgcaacgttaaagctataaaacccagcttcacaattttgatgattgga |
255 |
Q |
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| T |
48957585 |
atggcatgtttggtagcacggtagaattgagaaaaggacggaaggaaatcacggcaacgctaaagcttcaaaacccaacttcacaattttgaggattgga |
48957684 |
T |
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| Q |
256 |
gtgcattgggaagtgatattttaacgtgatgtggtttcaaaatcatatccaaac |
309 |
Q |
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| T |
48957685 |
gtgaattgggaagcgatattttaacgtgatatggtttcaaaatcatatccaaac |
48957738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 164 - 304
Target Start/End: Complemental strand, 40490470 - 40490333
Alignment:
| Q |
164 |
tttggtagcatggtagaattgagaaaagcacggcagcaaatcaacgcaacgttaaagctataaaacccagcttcacaatttt-gatgattggagtgcatt |
262 |
Q |
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|||| ||||| ||||||||||||||||||||| ||||||| |||| | ||||||| || ||||||||||| |||||| || |||||||||||||| |
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| T |
40490470 |
tttgatagcacggtagaattgagaaaagcacg----caaatcatggcaatgctaaagcttcaacacccagcttcaaaatttttgaggattggagtgcatt |
40490375 |
T |
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| Q |
263 |
gggaagtgatattttaacgtgatgtggtttcaaaatcatatc |
304 |
Q |
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| T |
40490374 |
ggaaagtggtattttaacgtggtgtggtttcaaaatcatatc |
40490333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 309
Target Start/End: Original strand, 4124001 - 4124077
Alignment:
| Q |
233 |
gcttcacaattttgatgattggagtgcattgggaagtgatattttaacgtgatgtggtttcaaaatcatatccaaac |
309 |
Q |
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| T |
4124001 |
gcttcacaattttcatggttcgagtgctttgggacacgatattgcaacatgatgtggtttcaaactcacatccaaac |
4124077 |
T |
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