View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13254_low_76 (Length: 323)
Name: NF13254_low_76
Description: NF13254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13254_low_76 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 6 - 311
Target Start/End: Original strand, 32891694 - 32891999
Alignment:
| Q |
6 |
aagaagaaatatgaaagagagaaataaattcattactgcaaaagaaacaagggcattaacactagcctcttcatatttttcctccccacctaattaattc |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32891694 |
aagaagaaatatgaaagagagaaataaattcattactgcaaaagaaacaagagcattaacactagcctcttcatatttttcctccccacctaattaattc |
32891793 |
T |
|
| Q |
106 |
ctttccatttactactacatggtcacaaccccactgaaaaggctaaagctatgctctcattcttccagatccaaaataatatgataaaaacaaaattaaa |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32891794 |
ctttccatttactactacatggtcacaaccccactgaaaaggctaaagctatgctctcattcttccagatccaaaataatatgataaaaacaaaattaaa |
32891893 |
T |
|
| Q |
206 |
gcatagggataatacataatatgcactaaatgcaataattaattaaaactagctaagatacaaaattaattnnnnnnncacctaccatgcatatatatgg |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
32891894 |
acatagggataatacataatatgcactaaatgcaataattaattaaaactagctaagatacaaaattaattaaaaaaacacctaccatgcatatatatgg |
32891993 |
T |
|
| Q |
306 |
aagaat |
311 |
Q |
| |
|
|||||| |
|
|
| T |
32891994 |
aagaat |
32891999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University