View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13254_low_8 (Length: 674)
Name: NF13254_low_8
Description: NF13254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13254_low_8 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 605; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 605; E-Value: 0
Query Start/End: Original strand, 21 - 665
Target Start/End: Complemental strand, 30099366 - 30098722
Alignment:
| Q |
21 |
accattgtgcaaggttccgaattcaggtcctgcgttacctgcagaagatgaaacaacaatccctttttccatagctgcaaatgaagctattgctatagga |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30099366 |
accattgtgcaaggttccgaattcaggtcctgcgttacctgcagaagatgaaacaacaatccctttttccatagctgcaaatgaagctattgctatagga |
30099267 |
T |
|
| Q |
121 |
tcttcataaagtggaacatcatcaaatcccattgaaattgaaatcacatcaacaccgtcgttaatagcttggtccatgccagctaaaacatcagaggcga |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30099266 |
tcttcataaagtggaacatcatcaaatcccattgaaattgaaatcacatcaacaccgtcgttaatagcttggtccatgccagctaaaacatcagaggcga |
30099167 |
T |
|
| Q |
221 |
aacgaccctcttcccaaatgactttgtacatagcaatcctagcttttggtgcaatgcctcttgctattcctttagcataaccaaaataagaagctccatt |
320 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
30099166 |
aacgaccctcttcccaaatgactttgtacatagcaatcctagcttttggtgcaatgcctcttgctattcctttggcataaccaaaataagaagctccatt |
30099067 |
T |
|
| Q |
321 |
aacatagttacctacaagttcaaagcagacagttcgattggtaagctcagagacaccgaatgagtactagctaggaagtcgagagttcaaacaccggaaa |
420 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30099066 |
aacatagttacctacaagttcaaagcagacagttcgattggtaagctcagagacaccgaatgagtactagctaggaagtcgagagttcaaacaccggaaa |
30098967 |
T |
|
| Q |
421 |
ctaacataatttactaacatttgtctccaaccacnnnnnnnntagttacctgcaacagttgatgatgtgtgagttccatgtcctatagtgtctctagctg |
520 |
Q |
| |
|
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
30098966 |
ctaacataatttactaacatttgtctccaacaacaaaaaaaatagttacctgcaacagttgatgatgtgtgagttccatgccctatagtgtctctagctg |
30098867 |
T |
|
| Q |
521 |
agttcatgctgattgtaacatttggatttgaagcaatcacacctttgttgaaatatctagctccaatcaatttgaagttacacattgaggtattgaattc |
620 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30098866 |
agttcatgctgattgtaacatttggatttgaagcaatcacacctttgttgaaatatctagctccaatcaatttgaagttacacattgaggtattgaattc |
30098767 |
T |
|
| Q |
621 |
ttggccagtttcacatgttcctttccatttgtttggaatattctt |
665 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
30098766 |
ttggccagtttcacatgttcctttccatttgtttggaattttctt |
30098722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 45 - 389
Target Start/End: Original strand, 30091571 - 30091914
Alignment:
| Q |
45 |
aggtcctgcgttacctgcagaagatgaaacaacaatccctttttccatagctgcaaatgaagctattgctataggatcttcataaagtggaacatcatca |
144 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||| |
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|
| T |
30091571 |
aggtcctgagttacctgcagaagacgaaacaacaatccctttctccatagctgcaaaagaagctattgctatagcatcttcataaagtggaacaccatca |
30091670 |
T |
|
| Q |
145 |
aatcccattgaaattgaaatcacatcaacaccgtcgttaatagcttggtccatgccagctaaaacatcagaggcgaaacgaccctcttcccaaatgactt |
244 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||| || ||| ||||||||||||||||||||| |
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|
| T |
30091671 |
aatcccatagaaattgaaatcacatcaacaccatcagcaatagcttggtccattccagctaaaacatcagaagccaaaagaccctcttcccaaatgactt |
30091770 |
T |
|
| Q |
245 |
tgtacatagcaatcctagcttttggtgcaatgcctcttgctattcctttagcataaccaaaataagaagctccattaacatagttacctacaagttcaaa |
344 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||| |||| | || |
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|
| T |
30091771 |
tgtacatagcaagcctagctcttggtgcaatgcctcttgctactcctttagcataaccaaaataagaagttccattgacatagttacct-gaagtccgaa |
30091869 |
T |
|
| Q |
345 |
gcagacagttcgattggtaagctcagagacaccgaatgagtacta |
389 |
Q |
| |
|
|||||||| |||||| ||||||| |||| || ||| |||||||| |
|
|
| T |
30091870 |
gcagacagctcgattagtaagctgagagttacagaaggagtacta |
30091914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 21 - 333
Target Start/End: Original strand, 30087567 - 30087879
Alignment:
| Q |
21 |
accattgtgcaaggttccgaattcaggtcctgcgttacctgcagaagatgaaacaacaatccctttttccatagctgcaaatgaagctattgctatagga |
120 |
Q |
| |
|
|||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||| | |
|
|
| T |
30087567 |
accattgtgcaaggttccatgcttaggtcctgagttacctgcagaagatgaaacaacaatccctttctccatagctgtaaaagaagctattgctatagca |
30087666 |
T |
|
| Q |
121 |
tcttcataaagtggaacatcatcaaatcccattgaaattgaaatcacatcaacaccgtcgttaatagcttggtccatgccagctaaaacatcagaggcga |
220 |
Q |
| |
|
|||||||||||||||| | |||||| ||| || |||||||||||||| |||||||| || |||| ||||||||||| ||||||||||||||||| || | |
|
|
| T |
30087667 |
tcttcataaagtggaataccatcaattccaatagaaattgaaatcacgtcaacaccatcaataattgcttggtccattccagctaaaacatcagaagcca |
30087766 |
T |
|
| Q |
221 |
aacgaccctcttcccaaatgactttgtacatagcaatcctagcttttggtgcaatgcctcttgctattcctttagcataaccaaaataagaagctccatt |
320 |
Q |
| |
|
| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| || |
|
|
| T |
30087767 |
taacatcctcttcccaaatgactttgtacatagcaatcttagcttttggtgcaatgcctcttgctactcctttagcatagccaaaataagaagctccgtt |
30087866 |
T |
|
| Q |
321 |
aacatagttacct |
333 |
Q |
| |
|
|||||||||||| |
|
|
| T |
30087867 |
gacatagttacct |
30087879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 143; E-Value: 9e-75
Query Start/End: Original strand, 463 - 665
Target Start/End: Original strand, 30091942 - 30092144
Alignment:
| Q |
463 |
tagttacctgcaacagttgatgatgtgtgagttccatgtcctatagtgtctctagctgagttcatgctgattgtaacatttggatttgaagcaatcacac |
562 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||||||| ||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |
|
|
| T |
30091942 |
tagttacctgcaactgttgatgatgtatgagttccatgtccgatactgtctctagctgagttcatcctgattctaacatttggatttgaagcaatcacac |
30092041 |
T |
|
| Q |
563 |
ctttgttgaaatatctagctccaatcaatttgaagttacacattgaggtattgaattcttggccagtttcacatgttcctttccatttgtttggaatatt |
662 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||||| ||||| |||| |||||||| |||||||||||||||||||||||||||||||| ||||| || |
|
|
| T |
30092042 |
ctttgttgaaagatctagctccaatcagtttgaagttgcacatggaggcattgaatttatggccagtttcacatgttcctttccatttgttcggaatttt |
30092141 |
T |
|
| Q |
663 |
ctt |
665 |
Q |
| |
|
||| |
|
|
| T |
30092142 |
ctt |
30092144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 464 - 665
Target Start/End: Original strand, 30087982 - 30088186
Alignment:
| Q |
464 |
agttacctgcaacagttgatgatgtgtgagttccatgtcctatagtgtctctagctgagttcatgctgattgtaacatttggatttgaa---gcaatcac |
560 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||| |||||||| ||||||| ||| | |||||||| |
|
|
| T |
30087982 |
agttacctgcaacagttgatgatgtatgagttccatgtccgatactgtctctagctgagttcttgctgattccaacatttcgatagttacctgcaatcac |
30088081 |
T |
|
| Q |
561 |
acctttgttgaaatatctagctccaatcaatttgaagttacacattgaggtattgaattcttggccagtttcacatgttcctttccatttgtttggaata |
660 |
Q |
| |
|
|||||| |||||| |||| |||||||||| ||||||||| |||| |||| |||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30088082 |
acctttattgaaagatcttgctccaatcagtttgaagttgcacacggaggcattgaatttatggccagtttcacatgttcctttccatttgtttggaatt |
30088181 |
T |
|
| Q |
661 |
ttctt |
665 |
Q |
| |
|
||||| |
|
|
| T |
30088182 |
ttctt |
30088186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 90; Significance: 4e-43; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 478 - 671
Target Start/End: Original strand, 35171586 - 35171779
Alignment:
| Q |
478 |
gttgatgatgtgtgagttccatgtcctatagtgtctctagctgagttcatgctgattgtaacatttggatttgaagcaatcacacctttgttgaaatatc |
577 |
Q |
| |
|
||||||||||||||| | ||||||||| |||||||||||||||||||| |||||| | |||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
35171586 |
gttgatgatgtgtgactaccatgtccttgtgtgtctctagctgagttcatactgattttgacatttggttttgatgcaatcacacctttgttgaaatatc |
35171685 |
T |
|
| Q |
578 |
tagctccaatcaatttgaagttacacattgaggtattgaattcttggccagtttcacatgttcctttccatttgtttggaatattcttcgacat |
671 |
Q |
| |
|
|||||||||| ||||| ||||||||||| || || ||||| ||||| || | || |||| ||||||||||||| |||| || || |||||||| |
|
|
| T |
35171686 |
tagctccaattaatttcaagttacacatagaagtgttgaaatcttgtcctgcttgacattttcctttccattttgttgggatgtttttcgacat |
35171779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 61 - 305
Target Start/End: Original strand, 35171307 - 35171551
Alignment:
| Q |
61 |
gcagaagatgaaacaacaatccctttttccatagctgcaaatgaagctattgctataggatcttcataaagtggaacatcatcaaatcccattgaaattg |
160 |
Q |
| |
|
||||||||||||||||| | ||||||||| |||||||||||||||||||| | ||||||||||||||||||||| || ||| || | ||| |||| |
|
|
| T |
35171307 |
gcagaagatgaaacaaccacatttttttccattgctgcaaatgaagctattgcaactggatcttcataaagtggaacactattaaaacctaatgagattg |
35171406 |
T |
|
| Q |
161 |
aaatcacatcaacaccgtcgttaatagcttggtccatgccagctaaaacatcagaggcgaaacgaccctcttcccaaatgactttgtacatagcaatcct |
260 |
Q |
| |
|
| || ||||||||| || | ||||||||| ||||| || || | ||||||||| || | |||||| || ||||||| ||||| ||||| ||||| || |
|
|
| T |
35171407 |
agataacatcaacattatcatcaatagcttgatccattcctgcaagaacatcagaagctagacgaccttcgtcccaaagtactttatacattgcaattct |
35171506 |
T |
|
| Q |
261 |
agcttttggtgcaatgcctcttgctattcctttagcataaccaaa |
305 |
Q |
| |
|
||||||||||||||| ||||| |||| ||||| ||||||||||| |
|
|
| T |
35171507 |
agcttttggtgcaatacctctagctacaccttttgcataaccaaa |
35171551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 55 - 127
Target Start/End: Original strand, 8946567 - 8946639
Alignment:
| Q |
55 |
ttacctgcagaagatgaaacaacaatccctttttccatagctgcaaatgaagctattgctataggatcttcat |
127 |
Q |
| |
|
|||||||| ||| | || |||| ||| |||||||||||||||||||| || |||||||| || |||||||||| |
|
|
| T |
8946567 |
ttacctgctgaacaagacacaaaaatacctttttccatagctgcaaaagaggctattgcaatcggatcttcat |
8946639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 21687715 - 21687763
Alignment:
| Q |
55 |
ttacctgcagaagatgaaacaacaatccctttttccatagctgcaaatg |
103 |
Q |
| |
|
||||||||||||| || |||| ||| |||||||||||||||||||||| |
|
|
| T |
21687715 |
ttacctgcagaagtagacacaaaaatacctttttccatagctgcaaatg |
21687763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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