View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13254_low_81 (Length: 300)
Name: NF13254_low_81
Description: NF13254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13254_low_81 |
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Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 49276043 - 49276334
Alignment:
| Q |
1 |
tctccaaatcttctgcatacttgctccatgctttgcatttgtcagctgaccactccagataatttacatacaatttcctgcatcgatctgtattaccaag |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49276043 |
tctccaaatcttctgcatacttgctccatgctttgcatttgtcagctgaccactccagataatttacatacaatttcctgcatcgatctgtattaccaag |
49276142 |
T |
|
| Q |
101 |
ctccaattccatttctatatacttcttaaatagcttatgtttaggagcctttccaatagcataatctaatattctacgagcacctttgaaattcagcata |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
49276143 |
ctccaattccatttctatatacttcttaaatagcttatgtttaggagcctttccaatagcataatctaatattcgacgagcacctttgaaattcagcata |
49276242 |
T |
|
| Q |
201 |
cgtatttcaaactgtgctgctagaagccataactttgcagatgagaacttcttgtgagccatcagtttgagaaacttcctgtacacatctct |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
49276243 |
cgtatttcaaactgtgctgctagaagccataactttgcagatgagaacttcttgtgagccatcagtttgagaaaattcctgtacacatctct |
49276334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 49279600 - 49279891
Alignment:
| Q |
1 |
tctccaaatcttctgcatacttgctccatgctttgcatttgtcagctgaccactccagataatttacatacaatttcctgcatcgatctgtattaccaag |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||||||| | |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
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| T |
49279600 |
tctccaactcttctgcatacttgctccatgcattgcattttttagctgaccactccagatactttacatacaaattcctgcatcgatctgtattaccaag |
49279699 |
T |
|
| Q |
101 |
ctccaattccatttctatatacttcttaaatagcttatgtttaggagcctttccaatagcataatctaatattctacgagcacctttgaaattcagcata |
200 |
Q |
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||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||| |||||| ||||||||| ||||||||| ||||||||||||||| |
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| T |
49279700 |
ctccaattccatttcaatatacttcttaaatagctcatgtttaggagcgattccaattgcataacctaatattcgacgagcaccattgaaattcagcata |
49279799 |
T |
|
| Q |
201 |
cgtatttcaaactgtgctgctagaagccataactttgcagatgagaacttcttgtgagccatcagtttgagaaacttcctgtacacatctct |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| | || |||||||||||||||| |
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| T |
49279800 |
cgtatttcaaactgtgctgctagaagccataactttgcagatgagatcttcttgtgagccatcaggttgaaacacctcctgtacacatctct |
49279891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 134 - 258
Target Start/End: Original strand, 2289284 - 2289408
Alignment:
| Q |
134 |
cttatgtttaggagcctttccaatagcataatctaatattctacgagcacctttgaaattcagcatacgtatttcaaactgtgctgctagaagccataac |
233 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||||||| |||||||||| ||| ||||||| ||||||||||||||| |||||||||||||||| | |
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| T |
2289284 |
cttatctttaggagcctttccaatagcattccctaatatttgacgagcacctgtgagattcagctgacgtatttcaaactgggctgctagaagccatatc |
2289383 |
T |
|
| Q |
234 |
tttgcagatgagaacttcttgtgag |
258 |
Q |
| |
|
|||||| |||||||||||| ||||| |
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|
| T |
2289384 |
tttgcaaatgagaacttctggtgag |
2289408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 11 - 132
Target Start/End: Original strand, 2289065 - 2289186
Alignment:
| Q |
11 |
ttctgcatacttgctccatgctttgcatttgtcagctgaccactccagataatttacatacaatttcctgcatcgatctgtattaccaagctccaattcc |
110 |
Q |
| |
|
||||||||||||||||||||| | ||| || |||| ||||||||||| ||| ||| |||| | ||| ||||||| |||| |||||||||||| || ||| |
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|
| T |
2289065 |
ttctgcatacttgctccatgcatagcaattttcaggtgaccactccaaatacttttcatatagttttctgcatctatctatattaccaagctgcagttct |
2289164 |
T |
|
| Q |
111 |
atttctatatacttcttaaata |
132 |
Q |
| |
|
|| ||||||||||||||||||| |
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|
| T |
2289165 |
atctctatatacttcttaaata |
2289186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 134 - 258
Target Start/End: Complemental strand, 34789649 - 34789525
Alignment:
| Q |
134 |
cttatgtttaggagcctttccaatagcataatctaatattctacgagcacctttgaaattcagcatacgtatttcaaactgtgctgctagaagccataac |
233 |
Q |
| |
|
||||| ||| ||||||||||||||||||| |||||||| ||||| || ||| ||||||| ||||||||||||||| |||||||||||||||| | |
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| T |
34789649 |
cttatcttttggagcctttccaatagcatttcctaatatttgacgagagccagtgagattcagctgacgtatttcaaactgggctgctagaagccatatc |
34789550 |
T |
|
| Q |
234 |
tttgcagatgagaacttcttgtgag |
258 |
Q |
| |
|
|||||| |||||||||||| ||||| |
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|
| T |
34789549 |
tttgcaaatgagaacttctggtgag |
34789525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 132
Target Start/End: Complemental strand, 34789871 - 34789750
Alignment:
| Q |
11 |
ttctgcatacttgctccatgctttgcatttgtcagctgaccactccagataatttacatacaatttcctgcatcgatctgtattaccaagctccaattcc |
110 |
Q |
| |
|
|||||||||||||| |||||| | ||| || |||| || |||||||| ||| ||| |||| | ||| |||||||||||| |||||||||||| || ||| |
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|
| T |
34789871 |
ttctgcatacttgcaccatgcatagcaattttcaggtgtccactccaaatatttttcatatagttttctgcatcgatctatattaccaagctgcagttct |
34789772 |
T |
|
| Q |
111 |
atttctatatacttcttaaata |
132 |
Q |
| |
|
|| ||||||||||||||||||| |
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|
| T |
34789771 |
atctctatatacttcttaaata |
34789750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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