View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13254_low_82 (Length: 300)
Name: NF13254_low_82
Description: NF13254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13254_low_82 |
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| [»] scaffold0131 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 44014695 - 44014415
Alignment:
| Q |
1 |
aggagatgaaatggtcgattcttttgctgctgagattcagattctcggctacattcggcataggaacattgtgaggctcataggttattgttctaatggg |
100 |
Q |
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| T |
44014695 |
aggagatgaaatggtcgattcttttgctgctgagattcagattctcggctacattcggcataggaacattgtgaggctcataggttattgttctaatggg |
44014596 |
T |
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| Q |
101 |
agtgttaagctacttctctataactttatccaaaatggtaatcttagacaacttttggaagggaatagaaacttagactgggaaactagatacaagatcg |
200 |
Q |
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| T |
44014595 |
agtgttaagctacttctctataactttatccaaaatggtaatcttagacaacttttggaagggaatagaaacttagactgggaaactagatacaagatcg |
44014496 |
T |
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| Q |
201 |
ctgttggttcagctcaaggtttagcttatcttcatcatgattgtgtcccatcaattctacacagagatgttaagtgcaata |
281 |
Q |
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| T |
44014495 |
ctgttggttcagctcaaggtttagcttatcttcatcatgattgtgtcccatcaattctacacagagatgttaagtgcaata |
44014415 |
T |
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Target: scaffold0131 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0131
Description:
Target: scaffold0131; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 67 - 122
Target Start/End: Complemental strand, 12748 - 12693
Alignment:
| Q |
67 |
cattgtgaggctcataggttattgttctaatgggagtgttaagctacttctctata |
122 |
Q |
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| T |
12748 |
cattgcgacgctcataagttattgttctaatgggaatattaagcttcttctctata |
12693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 124
Target Start/End: Original strand, 28754626 - 28754674
Alignment:
| Q |
76 |
gctcataggttattgttctaatgggagtgttaagctacttctctataac |
124 |
Q |
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| T |
28754626 |
gctcataagttattcttctaatgggaatattaagcttcttctctataac |
28754674 |
T |
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