View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13254_low_84 (Length: 296)
Name: NF13254_low_84
Description: NF13254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13254_low_84 |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 5 - 273
Target Start/End: Original strand, 41746586 - 41746854
Alignment:
| Q |
5 |
gttactaactgagaaatcagagtgtgtttgaggcacaaacgtatgaatgtcagaatgtgtctacttataaatgtgtgt--tacaaggaaaaagattttgt |
102 |
Q |
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| T |
41746586 |
gttactaactgagaaatcagagtgtgtttgaggcacaaacgtatgaatgtcagaatgtgtctacttataaatgtgtgtgttacaaggaaaaagattttgt |
41746685 |
T |
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| Q |
103 |
caacnnnnnnnnnnnnnnggaaaaggatttaagtggaaggaggggttacgaattttcagaggaaagtggtgtgttaataagttttggaatcatttaattg |
202 |
Q |
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| T |
41746686 |
caacaaaaaaaaaaaa--ggaaaaggatttaagtggaaggaggggttacgaattctcagaggaaagtggtgtgttaataagttttggaatcatttaattg |
41746783 |
T |
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| Q |
203 |
caattatagaaccaagctgcaccattatcataatcatatgcagtgtatgcattttaatttgcatttgcatt |
273 |
Q |
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| T |
41746784 |
caattatagaaccaagctgcaccattatcataatcatatgcagtgtatgcattttaatttacatttgcatt |
41746854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 177
Target Start/End: Original strand, 41753898 - 41753944
Alignment:
| Q |
131 |
ttaagtggaaggaggggttacgaattttcagaggaaagtggtgtgtt |
177 |
Q |
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| T |
41753898 |
ttaagcggaaggaagggttccgaattttcagatgaaagtggtgtgtt |
41753944 |
T |
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