View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13254_low_87 (Length: 279)
Name: NF13254_low_87
Description: NF13254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13254_low_87 |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 5 - 270
Target Start/End: Original strand, 29093616 - 29093878
Alignment:
| Q |
5 |
gaggtcagatatgttggaggtggtgacttcagggtcggagccactcacaataacaacattgtgagggctcttacttgcacaacatttttggaacgcaacg |
104 |
Q |
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| T |
29093616 |
gaggtcagatatgtaggaggtggtgactccagggtcggagccactcacaataacaacattgtgagggctcttacttgcacaacatttttggaacgcagcg |
29093715 |
T |
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| Q |
105 |
ccatatctatactactactactagatggtaattttgcgaagttgatactttaattggtttgtttagtaacaatacaacatgaaaaaacatctcacctctt |
204 |
Q |
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| T |
29093716 |
ccatatctatact---actactatatggtaattttgcgaagttgatactttaattggtttgtttagtagcaatgcaacatgaaaaaacatctcacctctt |
29093812 |
T |
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| Q |
205 |
tcatattttggatcataatatttcataattgtgattttattttatttcaacaatcaatataacatg |
270 |
Q |
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| T |
29093813 |
tcatattttggatcataatatttcataattgtgattttattttatttcaacgatcaatataacatg |
29093878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 270
Target Start/End: Original strand, 6806980 - 6807045
Alignment:
| Q |
206 |
catattttggatcataatatttc-ataattgtgattttattttatttcaacaatcaatataacatg |
270 |
Q |
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| T |
6806980 |
catattttagatcataatatttttacaattgtgcttttattttattttaacaataaatacaacatg |
6807045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 203 - 270
Target Start/End: Complemental strand, 47945500 - 47945432
Alignment:
| Q |
203 |
tttcatattttggatcataatatttca-taattgtgattttattttatttcaacaatcaatataacatg |
270 |
Q |
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| T |
47945500 |
tttcatattttgaatcataatatttttgtaattgtgattttattttatttcaacaatcaatataacatg |
47945432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 265
Target Start/End: Complemental strand, 36840562 - 36840502
Alignment:
| Q |
206 |
catattttggatcataata-tttcataattgtgattttattttatttcaacaatcaatata |
265 |
Q |
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| T |
36840562 |
catattttgtatcttaatacttttataattgcaattttaatttatttcaacaatcaatata |
36840502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 206 - 270
Target Start/End: Complemental strand, 29283490 - 29283425
Alignment:
| Q |
206 |
catattttggatcataata-tttcataattgtgattttattttatttcaacaatcaatataacatg |
270 |
Q |
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| T |
29283490 |
catattttggatcataatacttttacaattgcaattttattttatttcaacaatcaatataacatg |
29283425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 207 - 270
Target Start/End: Original strand, 34054402 - 34054466
Alignment:
| Q |
207 |
atattttggatcataata-tttcataattgtgattttattttatttcaacaatcaatataacatg |
270 |
Q |
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|||||||||||||||||| ||| | ||||| ||||||||||| ||||||||||||||||||||| |
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| T |
34054402 |
atattttggatcataatacttttacaattgcaattttattttagttcaacaatcaatataacatg |
34054466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 270
Target Start/End: Complemental strand, 3422789 - 3422725
Alignment:
| Q |
207 |
atattttggatcataata-tttcataattgtgattttattttatttcaacaatcaatataacatg |
270 |
Q |
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|||||||| ||||||||| ||| | ||||| ||||||||||| ||||||||||||||||||||| |
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| T |
3422789 |
atattttgaatcataatacttttacaattgcaattttattttagttcaacaatcaatataacatg |
3422725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 265
Target Start/End: Complemental strand, 46252854 - 46252794
Alignment:
| Q |
206 |
catattttggatcataata-tttcataattgtgattttattttatttcaacaatcaatata |
265 |
Q |
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||||||||| ||| ||||| ||| ||||||| |||||| ||||||||||||||||||||| |
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| T |
46252854 |
catattttgtatcttaatacttttataattgcaattttaatttatttcaacaatcaatata |
46252794 |
T |
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