View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13254_low_88 (Length: 275)
Name: NF13254_low_88
Description: NF13254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13254_low_88 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 21 - 257
Target Start/End: Original strand, 36746834 - 36747070
Alignment:
| Q |
21 |
atgagagggaacttcaacctgcacaaataaattagatctacctattaagcaacagaataacactataaatcttaaatcaagataaataacattggctaaa |
120 |
Q |
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| T |
36746834 |
atgagagggaacttcaacctgcacaaataaattagatctacctattaagcaacagaataacactataaatcttaaatcaagataaataacattggctaaa |
36746933 |
T |
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| Q |
121 |
attctcaannnnnnnaccttaggattacaaagagaacgcctcaagttggaaaaacaaccatcacatactatggtgagaggagcctttgctgtgaactctt |
220 |
Q |
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| T |
36746934 |
attctcaatttttttaccttaggattacaaagagaacgcctcaagttggaaaaacaaccatcacatactatggtgagaggagcctttgctgtgaactctt |
36747033 |
T |
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| Q |
221 |
gaccactcttatttttgtagttcacacctttgatagt |
257 |
Q |
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| T |
36747034 |
gaccactcttatttttgtagttcacacctttgatagt |
36747070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 136 - 254
Target Start/End: Original strand, 12251744 - 12251862
Alignment:
| Q |
136 |
accttaggattacaaagagaacgcctcaagttggaaaaacaaccatcacatactatggtgagaggagcctttgctgtgaactcttgaccactcttatttt |
235 |
Q |
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| T |
12251744 |
accttaggtttgcaaagagaactcctcaagtttgaaaaacatccatcacatacaatagtgagaggagccttttcattgaactcttgtccactcttgtttt |
12251843 |
T |
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| Q |
236 |
tgtagttcacacctttgat |
254 |
Q |
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| T |
12251844 |
tgtaattcacccctatgat |
12251862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 136 - 245
Target Start/End: Complemental strand, 12404242 - 12404133
Alignment:
| Q |
136 |
accttaggattacaaagagaacgcctcaagttggaaaaacaaccatcacatactatggtgagaggagcctttgctgtgaactcttgaccactcttatttt |
235 |
Q |
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| T |
12404242 |
accttaggtttgcaaagagaactcctcaaattagaaaaacagccatcgcatacaatagtgagaggagccttttcagtgaactcttgtccactcttgtttt |
12404143 |
T |
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| Q |
236 |
tgtagttcac |
245 |
Q |
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|||| ||||| |
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| T |
12404142 |
tgtaattcac |
12404133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 136 - 200
Target Start/End: Complemental strand, 47791191 - 47791127
Alignment:
| Q |
136 |
accttaggattacaaagagaacgcctcaagttggaaaaacaaccatcacatactatggtgagagg |
200 |
Q |
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| T |
47791191 |
accttaggattacaaagagaacggcgcaagtttgagaaacaaccatcacaaacaatggtaagagg |
47791127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 254
Target Start/End: Original strand, 4767451 - 4767569
Alignment:
| Q |
136 |
accttaggattacaaagagaacgcctcaagttggaaaaacaaccatcacatactatggtgagaggagcctttgctgtgaactcttgaccactcttatttt |
235 |
Q |
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| T |
4767451 |
accttagggttgcaaagagaacgacgcaagtttgagaaacagccatcacaaacaatggtaagaggagcatatgctgtcaatgcctgaccatctttattct |
4767550 |
T |
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| Q |
236 |
tgtagttcacacctttgat |
254 |
Q |
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|||| | |||||||||||| |
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| T |
4767551 |
tgtattgcacacctttgat |
4767569 |
T |
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