View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13254_low_89 (Length: 273)
Name: NF13254_low_89
Description: NF13254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13254_low_89 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 32704616 - 32704887
Alignment:
| Q |
1 |
ttccaagcactccatgctgctgggttttgcggcattaaatttttatcacgatgaagataaatatcactgccaatacagatcaatcaataattatgcattt |
100 |
Q |
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| T |
32704616 |
ttccaagcactccatgctgctgggttttgcggcattaaatttttatcacgatgaagataaatatcactgccaatacagatcaatcaataattatgcattt |
32704715 |
T |
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| Q |
101 |
ggacttagacaacaaaaactctcttcatattaatatggatttttacctgtatgcatattgaaaagcaccaataattcttctctcatcatatgttgcttca |
200 |
Q |
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| T |
32704716 |
ggacttagacaacaaaa-ctctcttcatattaatatggatttttacctgtatgcatattgaaaagcaccaataattcttctctcatcatatgttgcttca |
32704814 |
T |
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| Q |
201 |
tctcctaataatctcaaagcatcaggtgcatgtactgccattatgcatccatcatacacttcttcagaaccat |
273 |
Q |
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| T |
32704815 |
tctcctaataatctcaaagcatcaggtgcatgtactgacattatgcatccatcatacacttcttcagaaccat |
32704887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 141 - 271
Target Start/End: Complemental strand, 16808259 - 16808129
Alignment:
| Q |
141 |
ttttacctgtatgcatattgaaaagcaccaataattcttctctcatcatatgttgcttcatctcctaataatctcaaagcatcaggtgcatgtactgcca |
240 |
Q |
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||||||| ||| |||||||||||||||||| ||||| | ||||| ||||||||||||||||||||| | ||| | ||||||| ||||||||||| | |
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| T |
16808259 |
ttttaccaatatacatattgaaaagcaccaagtattctacattcatctgatgttgcttcatctcctaatattttcagaacatcaggggcatgtactgcta |
16808160 |
T |
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| Q |
241 |
ttatgcatccatcatacacttcttcagaacc |
271 |
Q |
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| T |
16808159 |
ttatgcaagaatcatacatttcttcggaacc |
16808129 |
T |
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