View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13254_low_9 (Length: 674)
Name: NF13254_low_9
Description: NF13254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13254_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 390; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 152 - 655
Target Start/End: Original strand, 42779751 - 42780255
Alignment:
| Q |
152 |
tgtaccaccaccaaaaatggcaccaatagagacgcaaaaacgcagcagcacaaattcaaaagaatagaccacatattgctagcnnnnnnnngcaacaaat |
251 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
42779751 |
tgtaccaccaccaaaaatggcaccaatagagacgcaaaaacgcagcagcacaaattcaaaagaatagaccacatattgctagcaaaaaaaagcaacaaat |
42779850 |
T |
|
| Q |
252 |
tcaattttcttcactagaacaaaagccgcaaattcgaaccaatcattcaagaaaaaacgcaattatattcccaaatgttttgagaactcaataacggaac |
351 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42779851 |
tcaattttcttcactagaacaaaagccgcaaattcgaaccaatcattcaagaaaaaacgcaattatattcccaaatgttttgagaactcaataacggaac |
42779950 |
T |
|
| Q |
352 |
cgtagtttaagatggatcaaacaaagctcttgataccacgttaatagtctaggtttcaaagacaataacaaaacaacgacgatagctagggtttcataga |
451 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42779951 |
cgtagtttaagatggatcaaacaaagctcttgataccacgttaatagtctaggtttcaaagacaataacaaaacaacgacgatagctagggtttcataga |
42780050 |
T |
|
| Q |
452 |
atactaatagcttagcattacaaaaggatac-nnnnnnnnnnnnnnnnnncataaaggactctaaactaacggacccaatatcatagcccaataacttta |
550 |
Q |
| |
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||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
42780051 |
atactaatagcttagcattacaaaagggtacaaaaaaaataaaaataaaacataaaggactctaaactaacggacccaataacatagcccaataacttta |
42780150 |
T |
|
| Q |
551 |
tcatctaacaagcctttgaacaaaagacannnnnnngtagtgggtcattgacactgttgattacacaacacatcgcacatgcagtggcagatccgacgtt |
650 |
Q |
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| T |
42780151 |
tcatctaacaagcctttgaacaaaagacatttttttgtagtgggtcattgacactgttgattacacaacacatcgcacatgcagtggcagatccgacgtt |
42780250 |
T |
|
| Q |
651 |
tgcat |
655 |
Q |
| |
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||||| |
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| T |
42780251 |
tgcat |
42780255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 42779615 - 42779693
Alignment:
| Q |
16 |
atacagactaaatgaaagcaatgacaacaactaaatcaaaatcaacgtaactagatgctaggaacaagtacttcgtagc |
94 |
Q |
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| T |
42779615 |
atacagactaaatgaaagcaatgacaacaactaaatcaaaatcaacgtaactagatgctaggaacaagtacttcgtagc |
42779693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 5e-30; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 165 - 427
Target Start/End: Complemental strand, 29554903 - 29554641
Alignment:
| Q |
165 |
aaaatggcaccaatagagacgcaaaaacgcagcagcacaaattcaaaagaatagaccacatattgctagc-nnnnnnnngcaacaaattcaattttcttc |
263 |
Q |
| |
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|||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||| | |||||| ||| |||||||||| |
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| T |
29554903 |
aaaatggcaccaatagtgacgcaaaa-ctcagcagcacaaattcaaaagaatagaccacatattgctaactgaacaaaagcaacagattaaattttcttc |
29554805 |
T |
|
| Q |
264 |
actagaacaaaagccgcaaattcgaaccaatcattcaagaaaaaacgcaattatattcccaaatgttttgagaactcaataacgg------aaccgtagt |
357 |
Q |
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| ||||||||| ||||||||| |||||||||| ||| ||| || | ||||| ||| |||| ||||||||||| || ||||||||| |
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| T |
29554804 |
aacagaacaaaaaccgcaaattttaaccaatcatccaaaaaacaa------tgtattctaaaaaattttaggaactcaataatggaagtgaaaccgtagt |
29554711 |
T |
|
| Q |
358 |
ttaagatggatcaaacaaagctcttgataccacgttaatagtctaggtttcaaagacaataacaaaacaa |
427 |
Q |
| |
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| ||| |||||| ||||||||| ||||||||| ||||| | ||||||||||| ||||||||||||||||| |
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|
| T |
29554710 |
tcaaggtggatcgaacaaagcttttgataccatgttaacaatctaggtttcagagacaataacaaaacaa |
29554641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 51 - 91
Target Start/End: Complemental strand, 29555017 - 29554977
Alignment:
| Q |
51 |
tcaaaatcaacgtaactagatgctaggaacaagtacttcgt |
91 |
Q |
| |
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||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
29555017 |
tcaaaatcaacataactagatgccaggaacaagtacttcgt |
29554977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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