View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13254_low_96 (Length: 261)
Name: NF13254_low_96
Description: NF13254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13254_low_96 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 17348124 - 17348378
Alignment:
| Q |
1 |
cgccgaatgtgtgtgtcaagtaaatcaacatttccactaatctctgatactgacccttgtcaactttggcactttcctcctcaaggcatatcctgcaatt |
100 |
Q |
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| T |
17348124 |
cgccgaatgtgtgtgtcaagtaaaccaacatttccactaatctctgatactgacccttgtcaactttggcactttcctcctcaaggcatatcctgcaatt |
17348223 |
T |
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| Q |
101 |
tttctcaatggaaagacttgtaggtttgcatccaagttttattatttcatacaaaagatcaaatacatactttctctaagatatataaatgcctttcttt |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
17348224 |
tttctcaatggaaagacttgtaggtttgcatcaaagttttattatttcatgcaaaagatcaaatacatactttctctaagacatataaatgcctttcttt |
17348323 |
T |
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| Q |
201 |
gagtaggttgccaattcacaagaaatagaaatacttaagttaaccaaggtctttcacctca |
261 |
Q |
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| T |
17348324 |
gagtaggttgccaattcaca------agaaatacttaagttaaccaaggtctttcatctca |
17348378 |
T |
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Target: chr7 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 22 - 139
Target Start/End: Complemental strand, 27471365 - 27471248
Alignment:
| Q |
22 |
aaatcaacatttccactaatctctgatactgacccttgtcaactttggcactttcctcctcaaggcatatcctgcaatttttctcaatggaaagacttgt |
121 |
Q |
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|||||||| ||||||||||||||| |||| ||||||||||||||||||| ||||||||||| | | ||||||| |||||| ||||||||| | ||||| |
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| T |
27471365 |
aaatcaacttttccactaatctctaataccgacccttgtcaactttggcgctttcctcctcgaaacttatcctgtaattttactcaatggagacacttgc |
27471266 |
T |
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| Q |
122 |
aggtttgcatccaagttt |
139 |
Q |
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| T |
27471265 |
aggtttacatccaagttt |
27471248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 177
Target Start/End: Complemental strand, 44834019 - 44833985
Alignment:
| Q |
143 |
tatttcatacaaaagatcaaatacatactttctct |
177 |
Q |
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| T |
44834019 |
tatttcctacaaaagatcaaatacatactttctct |
44833985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 162
Target Start/End: Complemental strand, 39779441 - 39779290
Alignment:
| Q |
9 |
gtgtgtgtcaagtaaatcaacatttccactaatctctgatactgacccttgtcaactttggcactttcctcctcaaggcatatcctgcaatttttctcaa |
108 |
Q |
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||||||| ||| ||||||||| |||| |||||||| ||||| | |||||||| || |||||||||||||||||||| | ||| | | ||| ||||||| |
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| T |
39779441 |
gtgtgtgccaaataaatcaacttttc-actaatctttgatattaacccttgttaagtttggcactttcctcctcaa-acttattccgtgattgttctcaa |
39779344 |
T |
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| Q |
109 |
tggaaagacttgtaggtttgcatccaagttttattatttcatacaaaagatcaa |
162 |
Q |
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| T |
39779343 |
tgggaacacttgcaggtttacatccaagttttcttatttcctgcaaaagatcaa |
39779290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 206
Target Start/End: Complemental strand, 40747230 - 40747041
Alignment:
| Q |
17 |
caagtaaatcaacatttccactaatctctgatactgacccttgtcaactttggcactttcctcctcaaggcatatcctgcaatttttctcaatggaaaga |
116 |
Q |
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|||||||||||| || |||||| || ||||||| ||||| ||||||||||||| |||| ||||||| || | | || ||||| |||| |||||| | |
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| T |
40747230 |
caagtaaatcaattttctcactaacctttgatactaaccctagtcaactttggcattttcttcctcaaagcccaacttgtgattttactcattggaaaca |
40747131 |
T |
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| Q |
117 |
cttgtaggtttgcatccaagttttattatttcatacaaaagatcaaatacatactttctctaagatatataaatgcctttctttgagtag |
206 |
Q |
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| T |
40747130 |
cttgtaagtttgcattcaaggtttcctatttcctgcaaacgattaaacacataatttctctaagagatagaaaagcattgttttgagtag |
40747041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 140
Target Start/End: Original strand, 27914396 - 27914483
Alignment:
| Q |
53 |
acccttgtcaactttggcactttcctcctcaaggcatatcctgcaatttttctcaatggaaagacttgtaggtttgcatccaagtttt |
140 |
Q |
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| T |
27914396 |
acccttgtcaactttggcactttcatcctcaaagctcaccttgttatttttctcaatgggaacactcgtaggtttgcaacgaagtttt |
27914483 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 204
Target Start/End: Complemental strand, 25485531 - 25485479
Alignment:
| Q |
152 |
caaaagatcaaatacatactttctctaagatatataaatgcctttctttgagt |
204 |
Q |
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| T |
25485531 |
caaaagattaagtacatactttctcttagagataaaaattcctttctttgagt |
25485479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 32835334 - 32835390
Alignment:
| Q |
10 |
tgtgtgtcaagtaaatcaacatttccactaatctctgatactgacccttgtcaactt |
66 |
Q |
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| T |
32835334 |
tgtgtgccatgtaaatcaactttctcattaatctctgatattgacccttgtcaactt |
32835390 |
T |
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