View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13254_low_97 (Length: 256)
Name: NF13254_low_97
Description: NF13254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13254_low_97 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 11 - 256
Target Start/End: Original strand, 40473101 - 40473349
Alignment:
| Q |
11 |
cacagaccacatacataataaaagtaaggcatgcatgataaaattaaaagcacttgtgtcccttnnnnnnnnnnn----cttgtgcaatatcatctacat |
106 |
Q |
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| T |
40473101 |
cacaaaccacatacatactagaagtaaggcatgcatgataaaattaaaagcacttgtgttccttaaaaaaaaaaaaaaacttgtgcaatatcatctacat |
40473200 |
T |
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| Q |
107 |
gaattatatgttggaattaaacgcaatagactataaatcatggatacaaattatatcatatctacagtatcaaagataggatcgtgaacatcatagcgta |
206 |
Q |
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| T |
40473201 |
gaattatatgttggaattaaacgcaataga-tataaatcatggatgcaaattatatcatatctatagtgtcaaagataagatcgtgaacatcatagcgta |
40473299 |
T |
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| Q |
207 |
cctttaaggttaaagagataccggtgagagaacagagagactaaacataa |
256 |
Q |
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| T |
40473300 |
cctttaaggttaaagagataccggtgagagaatagagagactaaacataa |
40473349 |
T |
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