View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13254_low_98 (Length: 255)
Name: NF13254_low_98
Description: NF13254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13254_low_98 |
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Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 17 - 236
Target Start/End: Original strand, 9692155 - 9692374
Alignment:
| Q |
17 |
atacacttaaattaattacatatatattctagctagtaattgcattggtgacaaacgattaaaataagagattgcaagacttactgaaaaattatcacat |
116 |
Q |
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| T |
9692155 |
atacacttaaattaattacatatatattctagctagtaattgcattggtgacaaacgattaaaataagagattgcaagacttactgaaaaattatcacat |
9692254 |
T |
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| Q |
117 |
ttgtatatggttgtatatgtgacccttggattctctcttaaaatgctttcaggtttgaagaactgcaaatctttacttagtccaacatcttctggcttca |
216 |
Q |
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| T |
9692255 |
ttgtatatggttgtatatgtgacccttggattctctctgaaaatgctttcaggtttgaagaactgcaaatctttacttagtccaacatcttctggcttca |
9692354 |
T |
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| Q |
217 |
tgttgtctggttattaaaaa |
236 |
Q |
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|||||||||||||||||||| |
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| T |
9692355 |
tgttgtctggttattaaaaa |
9692374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 95 - 220
Target Start/End: Complemental strand, 33528301 - 33528176
Alignment:
| Q |
95 |
acttactgaaaaattatcacatttgtatatggttgtatatgtgacccttggattctctcttaaaatgctttcaggtttgaagaactgcaaatctttactt |
194 |
Q |
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|||||| || ||||| ||||||||||| | || || |||||||||||| |||||||| | | ||| || |||| |||||||| |||| |||| ||||| |
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| T |
33528301 |
acttacagagaaattgtcacatttgtagactgtggtgtatgtgaccctttgattctctttaataatatttccaggcttgaagaattgcagatctctactt |
33528202 |
T |
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| Q |
195 |
agtccaacatcttctggcttcatgtt |
220 |
Q |
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||||||||||| |||||||||||||| |
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| T |
33528201 |
agtccaacatcctctggcttcatgtt |
33528176 |
T |
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