View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13254_low_99 (Length: 255)

Name: NF13254_low_99

Description: NF13254

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF13254_low_99

[»] chr7 (2 HSPs)

Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 2)

Name: chr7

Description:

Target: chr7; HSP #1

Raw Score: 219; E-Value: 1e-120

Query Start/End: Original strand, 14 - 236

Target Start/End: Original strand, 39944684 - 39944906

Alignment:

Q	14	tcatcaccaggcctcaatcctctacaaccaccaccgccattctcaccaagtgacgacccttcaccaacaccaagcatagctaatgaacaacatgaacaca	113	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	39944684	tcatcaccaggcctcaatcctctaccaccaccaccgccattctcaccaagtgacgacccttcaccaacaccaagcatagctaatgaacaacatgaacaca	39944783	T

Q	114	atagatgggacagggttgagagtttctgcaataaatacctgataaaccaaggttattggatagataaaaagacaagagaacaattaatggtagcagcaac	213	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	39944784	atagatgggacagggttgagagtttctgcaataaatacctgataaaccaaggttattggatagataaaaagacaagagaacaattaatggtagcagcaac	39944883	T

Q	214	tgtgattgcaactatgacttttc	236	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	39944884	tgtgattgcaactatgacttttc	39944906	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2

Raw Score: 41; E-Value: 0.00000000000002

Query Start/End: Original strand, 160 - 236

Target Start/End: Original strand, 39949175 - 39949251

Alignment:

Q	160	ccaaggttattggatagataaaaagacaagagaacaattaatggtagcagcaactgtgattgcaactatgacttttc	236	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\| \|\|\|\|\| \|\|\|\|
T	39949175	ccaaggtaattggattgataaaaagacaaaagaacaatccatggtagcagcaactgtaatcgcaacaatgacatttc	39949251	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]