View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13255_high_13 (Length: 261)
Name: NF13255_high_13
Description: NF13255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13255_high_13 |
 | |
|
| [»] chr2 (4 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 17 - 261
Target Start/End: Original strand, 34448354 - 34448598
Alignment:
| Q |
17 |
atccacaagtagtgcaacaatgtaatcttttagcagttctggttttgtgtatttatcctcaaagttttcgtatgcaaactcagtcactcgcgccacattc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34448354 |
atccacaagtagtgcaacaatgtaatcttttagcagttctggttttgtgtatttatcctcaaagttttcgtatgcaaactcagtcactcgcgccacattc |
34448453 |
T |
|
| Q |
117 |
ataataaattcaagcactggtcttgggatgttgtctaacttgagacactcttcattcatgaccttccaataattctcgatttccttgcgaatgaagttat |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34448454 |
ataataaattcaagcactggtcttgggatgttgtctaacttgagacactcttcattcatgaccttccaataattctcgatttccttgcgaatgaagttat |
34448553 |
T |
|
| Q |
217 |
aagcctcttctcctgacatgtcatattgcttcatgcaacattcca |
261 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34448554 |
aagcctcttctcctgacatgtcatattgcttcatgcaacattcca |
34448598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 23 - 175
Target Start/End: Original strand, 34483724 - 34483876
Alignment:
| Q |
23 |
aagtagtgcaacaatgtaatcttttagcagttctggttttgtgtatttatcctcaaagttttcgtatgcaaactcagtcactcgcgccacattcataata |
122 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||| ||||| || | ||| |||||||| | |||| |
|
|
| T |
34483724 |
aagtagtgcaacaatgtaatctttcatcagttctgcttttgtgtatttatcctcaaagttttcgtatgtgaactctgttattcgtgccacattaagaata |
34483823 |
T |
|
| Q |
123 |
aattcaagcactggtcttgggatgttgtctaacttgagacactcttcattcat |
175 |
Q |
| |
|
| ||||||||| | ||||| ||||| |||| |||||| |||||||||||||| |
|
|
| T |
34483824 |
atttcaagcaccgaccttggaatgttttctatcttgaggcactcttcattcat |
34483876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 21 - 256
Target Start/End: Original strand, 34459591 - 34459826
Alignment:
| Q |
21 |
acaagtagtgcaacaatgtaatcttttagcagttctggttttgtgtatttatcctcaaagttttcgtatgcaaactcagtcactcgcgccacattcataa |
120 |
Q |
| |
|
||||| |||||| ||||||||||||| ||||| ||||| |||||||||||||||||||||| ||||||| || | ||| ||||||| | ||| | || |
|
|
| T |
34459591 |
acaagcagtgcagcaatgtaatctttgagcagatctggatttgtgtatttatcctcaaagtcttcgtatatgaagtgagttcctcgcgcaaaattaagaa |
34459690 |
T |
|
| Q |
121 |
taaattcaagcactggtcttgggatgttgtctaacttgagacactcttcattcatgaccttccaataattctcgatttccttgcgaatgaagttataagc |
220 |
Q |
| |
|
|| ||||||||||||| ||||| |||| || ||| || || |||||||||||||| || |||| ||| || || |||||| |||||| |||||||| |
|
|
| T |
34459691 |
tacattcaagcactggccttggaatgtggtgtaattttaggcactcttcattcataactctccataaatcttcaatctccttgagaatgagtttataagc |
34459790 |
T |
|
| Q |
221 |
ctcttctcctgacatgtcatattgcttcatgcaaca |
256 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
34459791 |
ctcttcttgtgatatgtcatattgcttcatgcaaca |
34459826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 60 - 259
Target Start/End: Original strand, 34473669 - 34473868
Alignment:
| Q |
60 |
tttgtgtatttatcctcaaagttttcgtatgcaaactcagtcactcgcgccacattcataataaattcaagcactggtcttgggatgttgtctaacttga |
159 |
Q |
| |
|
||||||||||||||||| |||||||||| | ||||| || | ||| |||||||| | |||| |||||||||| || | ||||||| ||||||||||| |
|
|
| T |
34473669 |
tttgtgtatttatcctcgtagttttcgtaggtgaactcggttattcgtgccacattaagaatacattcaagcacagggttggggatgtagtctaacttga |
34473768 |
T |
|
| Q |
160 |
gacactcttcattcatgaccttccaataattctcgatttccttgcgaatgaagttataagcctcttctcctgacatgtcatattgcttcatgcaacattc |
259 |
Q |
| |
|
| |||||||||| || || ||||| ||| || || |||||| |||| ||||| ||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
34473769 |
ggaactcttcatttatatccatccaaaaatcttcaatgtccttgttaatgtgcttataggcctcttcttgtgacatgttgtattgcttcatgcaacattc |
34473868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 8e-33; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 60 - 259
Target Start/End: Complemental strand, 6132400 - 6132201
Alignment:
| Q |
60 |
tttgtgtatttatcctcaaagttttcgtatgcaaactcagtcactcgcgccacattcataataaattcaagcactggtcttgggatgttgtctaacttga |
159 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| | |||||||||||||| | |||| ||| | |||||| ||||||||| |||||| |||| |
|
|
| T |
6132400 |
tttgtgtatttatcctcaaagttttcgtatgtgaactcggctactcgcgccacattaacaatactttcgaccactgggcttgggatgcagtctaatttga |
6132301 |
T |
|
| Q |
160 |
gacactcttcattcatgaccttccaataattctcgatttccttgcgaatgaagttataagcctcttctcctgacatgtcatattgcttcatgcaacattc |
259 |
Q |
| |
|
|||||||||||||||| || ||||||||| ||||| || || |||||| || ||||| || ||| |||||| ||||||||||||||||||||||| |
|
|
| T |
6132300 |
gacactcttcattcataactatccaataatcttcgatctctttcagaatgagtttgtaagcttcctcttgtgacatatcatattgcttcatgcaacattc |
6132201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 175
Target Start/End: Complemental strand, 6135986 - 6135936
Alignment:
| Q |
125 |
ttcaagcactggtcttgggatgttgtctaacttgagacactcttcattcat |
175 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||| |||||||||||||| |
|
|
| T |
6135986 |
ttcaagcactggtcttggtatgcaatctaacttgaggcactcttcattcat |
6135936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University