View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13255_high_14 (Length: 251)
Name: NF13255_high_14
Description: NF13255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13255_high_14 |
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| [»] scaffold0288 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 34448837 - 34449039
Alignment:
| Q |
1 |
ccaataaaagataatatttgaagtgggtatgaagaagatatagatccattagccttgtattcatcatatgttggaatatatccttcactgcaccattttg |
100 |
Q |
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| T |
34448837 |
ccaataaaagataatatttgaagcgggtatgaagaagatatagatccattagccttgtattcatcatatgttggaatatatccttcactgcaccattttg |
34448936 |
T |
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| Q |
101 |
attcaacaaagtaggatcgtgccaatttgtaaaactgtaaattaatgaaaatattgatcaactaattcactgaaagagcaaaattaagtaaaattggtaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||| |
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| T |
34448937 |
attcaacaaagtaggatcgtgccaatttgtaaaactgtaaattaatgaaaatattgatcaactaattcactgatagagcaaaattaagcacaattggtaa |
34449036 |
T |
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| Q |
201 |
ttt |
203 |
Q |
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||| |
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| T |
34449037 |
ttt |
34449039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 12 - 153
Target Start/End: Original strand, 34485434 - 34485575
Alignment:
| Q |
12 |
taatatttgaagtgggtatgaagaagatatagatccattagccttgtattcatcatatgttggaatatatccttcactgcaccattttgattcaacaaag |
111 |
Q |
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| T |
34485434 |
taatatttgaagtgggagtgtagaagatataattccattagccttgtattcatcatatgttggaataaatccttcattgcaccattttgtttcaaccaag |
34485533 |
T |
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| Q |
112 |
taggatcgtgccaatttgtaaaactgtaaattaatgaaaata |
153 |
Q |
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| T |
34485534 |
taggattgtgccagtttataaaactgtaaattaatcaaaata |
34485575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 44 - 161
Target Start/End: Original strand, 34460206 - 34460323
Alignment:
| Q |
44 |
atccattagccttgtattcatcatatgttggaatatatccttcactgcaccattttgattcaacaaagtaggatcgtgccaatttgtaaaactgtaaatt |
143 |
Q |
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| T |
34460206 |
atccattaaccttgtattcatcatatgttggaatatatcctgctttgcaccattttgcttcaaccaaataggctcgtgccactttataaaactgaaaaca |
34460305 |
T |
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| Q |
144 |
aatgaaaatattgatcaa |
161 |
Q |
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| T |
34460306 |
aataaaaatattgatcaa |
34460323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 7 - 158
Target Start/End: Original strand, 34474113 - 34474264
Alignment:
| Q |
7 |
aaagataatatttgaagtgggtatgaagaagatatagatccattagccttgtattcatcatatgttggaatatatccttcactgcaccattttgattcaa |
106 |
Q |
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| T |
34474113 |
aaagatattattgaaagtgggattgtagaagatataagtccattagctttatattcatcatatgttggtataattccttcattgccccatttagtttcca |
34474212 |
T |
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| Q |
107 |
caaagtaggatcgtgccaatttgtaaaactgtaaattaatgaaaatattgat |
158 |
Q |
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| T |
34474213 |
ccaagtaggattgtgccaatttatagaactgtaaattaatcaaaatattgat |
34474264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 33 - 142
Target Start/End: Complemental strand, 6131270 - 6131161
Alignment:
| Q |
33 |
agaagatatagatccattagccttgtattcatcatatgttggaatatatccttcactgcaccattttgattcaacaaagtaggatcgtgccaatttgtaa |
132 |
Q |
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|||||||||| ||||||||| |||||||||| || ||||||||| |||||||| |||||||||||| |||||| ||||||||| ||||||||| ||| |
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| T |
6131270 |
agaagatataattccattagctttgtattcattgtaagttggaataaatccttcattgcaccattttgcttcaaccaagtaggattttgccaatttataa |
6131171 |
T |
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| Q |
133 |
aactgtaaat |
142 |
Q |
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| T |
6131170 |
aactgtaaat |
6131161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 33 - 151
Target Start/End: Original strand, 16250 - 16367
Alignment:
| Q |
33 |
agaagatatagatccattagccttgtattcatcatatgttggaatatatccttcactgcaccattttgattcaacaaagtaggatcgtgccaatttgtaa |
132 |
Q |
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|||||||||| ||||||| |||||||||||| |||| |||| || ||| |||| | ||||||||||||||||| || || ||| | ||||||| ||| |
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| T |
16250 |
agaagatataagtccattaaccttgtattcattatatattggtatgaatc-ttcattccaccattttgattcaaccaaatatgattctaccaatttataa |
16348 |
T |
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| Q |
133 |
aactgtaaattaatgaaaa |
151 |
Q |
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| T |
16349 |
aactgtaaattaatcaaaa |
16367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 146
Target Start/End: Complemental strand, 15977 - 15877
Alignment:
| Q |
45 |
tccattagccttgtattcatcatatgttggaatatatccttcactgcaccattttgattcaac-aaagtaggatcgtgccaatttgtaaaactgtaaatt |
143 |
Q |
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||||||||| || |||||||||||||||| | || ||| |||| ||||||||||||||||||| ||| || ||||| |||| || ||||||||| |||| |
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| T |
15977 |
tccattagcgttatattcatcatatgttgta-taaatc-ttcattgcaccattttgattcaacaaaaatacaatcgtaccaacttataaaactgtgaatt |
15880 |
T |
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| Q |
144 |
aat |
146 |
Q |
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||| |
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| T |
15879 |
aat |
15877 |
T |
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