View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13255_low_16 (Length: 251)
Name: NF13255_low_16
Description: NF13255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13255_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 32829604 - 32829841
Alignment:
| Q |
1 |
tccttcaagtgtggtggtttcgctataggcttcacaacaagccatgtaacctttgatggacttagcttcaaaaatttcttagacaaccttgcttcattgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32829604 |
tccttcaagtgtggtggtttcgctataggcttcacaacaagccatgtaacctttgatggacttagcttcaaaaatttcttagacaaccttgcttcattgg |
32829703 |
T |
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| Q |
101 |
ctaccaacatgaaactgactgtgacacccttccatgacagacaactcctagctgcacgatctcctccacatgtcaacttcccccaccctgagatgatcaa |
200 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
32829704 |
ctaccaacatgaaactgactgcgacacccttccatgacagacaactcctagctgcacgatctcctccacatgtaaacttcccccaccctgagatgatcaa |
32829803 |
T |
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| Q |
201 |
gctcgataatctacctttaggcattaaatctggtgtct |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
32829804 |
gctcgataatctacctttaggcattaaatctggtgtct |
32829841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 32812071 - 32812311
Alignment:
| Q |
1 |
tccttcaagtgtggtggtttcgctataggcttcacaacaagccatgtaacctttgatggacttagcttcaaaaatttcttagacaaccttgcttcattgg |
100 |
Q |
| |
|
||||||||||||||||||||||| | ||| |||||| |||||||| | || ||||||| | |||| |||||| |||||||||||||||||| |||||| |
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| T |
32812071 |
tccttcaagtgtggtggtttcgcatttggcatcacaagaagccatgcagccattgatgggcatagcctcaaaatattcttagacaaccttgctgcattgg |
32812170 |
T |
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| Q |
101 |
ctaccaacatgaaactgactgtgacacccttccatgacagacaactcctagctgcacgatctcctccacatgtcaacttcccccaccctgagatgatcaa |
200 |
Q |
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|| | |||||| ||||| | ||||||||||| |||||||||||||| |||| |||||||| |||||||||||| | ||||||||||||||||||||||| |
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| T |
32812171 |
ctgctaacatgccactgattatgacacccttcaatgacagacaactcttagccgcacgatcccctccacatgtcgatttcccccaccctgagatgatcaa |
32812270 |
T |
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| Q |
201 |
gctcgataa---tctacctttaggcattaaatctggtgtct |
238 |
Q |
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||| ||||| ||||||||||||| | |||||||||||| |
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| T |
32812271 |
gcttgataacctactacctttaggcaatgaatctggtgtct |
32812311 |
T |
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