View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13255_low_17 (Length: 247)
Name: NF13255_low_17
Description: NF13255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13255_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 20 - 241
Target Start/End: Original strand, 21404518 - 21404739
Alignment:
| Q |
20 |
gtgtattatgcaatatatgacattaccttgatgaatagacttgtattattgattttaacgtagtagttaagcaacaataatttgacaccactaagcatgt |
119 |
Q |
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| T |
21404518 |
gtgtattatgcaatatatgacattaccttgatgaatagacttgtattattgattttaacgtagtagttaagcaacaataatttgacaccactaagcatgt |
21404617 |
T |
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| Q |
120 |
ttcattgttcaaattcaggtaccaaaacaaaagcatcattagaagtgttacacaaacatgggccatgttcccaactgaataatggaaaagcaaaaattgt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
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| T |
21404618 |
ttcattgttcaaattcaggtaccaaaacaaaagcatcattagaagtgttacacaaacatgggccatgttcccaagtgaataatggaaaagcaaaaattat |
21404717 |
T |
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| Q |
220 |
tccaacacacagtgatattctt |
241 |
Q |
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|||| ||||||||||||||||| |
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| T |
21404718 |
tccagcacacagtgatattctt |
21404739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 131 - 240
Target Start/End: Original strand, 21378223 - 21378335
Alignment:
| Q |
131 |
aattcaggtaccaaaacaaaagcatcattagaagtgttacacaaacatgggccatgttcccaactgaat---aatggaaaagcaaaaattgttccaacac |
227 |
Q |
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||||||||| | |||| ||||||||||||||| ||| ||| ||| |||||||| ||||||||||||||| ||||| ||||||| ||| ||||||||| |
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| T |
21378223 |
aattcaggtccaaaaagaaaagcatcattagatgtggtacccaagcatgggccttgttcccaactgaataacaatggcaaagcaagtattcttccaacac |
21378322 |
T |
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| Q |
228 |
acagtgatattct |
240 |
Q |
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| T |
21378323 |
acagtgatattct |
21378335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 143 - 241
Target Start/End: Complemental strand, 16225283 - 16225176
Alignment:
| Q |
143 |
aaaacaaaagcatcattagaagtgttacacaaacatgggccatgttcccaactgaat---------aatggaaaagcaaaaattgttccaacacacagtg |
233 |
Q |
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|||| ||||||||||||||| ||| ||||||| |||||||||||||||||||||||| |||||||||||||| ||| |||||||||| |||| |
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| T |
16225283 |
aaaagaaaagcatcattagatgtggtacacaagcatgggccatgttcccaactgaataagaataacaatggaaaagcaaatattcttccaacacatagtg |
16225184 |
T |
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| Q |
234 |
atattctt |
241 |
Q |
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|| ||||| |
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| T |
16225183 |
atgttctt |
16225176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 143 - 241
Target Start/End: Original strand, 26171393 - 26171500
Alignment:
| Q |
143 |
aaaacaaaagcatcattagaagtgttacacaaacatgggccatgttcccaactgaat---------aatggaaaagcaaaaattgttccaacacacagtg |
233 |
Q |
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|||| ||||||||||||||| ||| ||||||| |||||||||||||||||||||||| ||||| |||||||| ||| |||||||| |||||| |
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| T |
26171393 |
aaaagaaaagcatcattagatgtggtacacaagcatgggccatgttcccaactgaataagaaaaacaatggcaaagcaaatattcttccaacagacagtg |
26171492 |
T |
|
| Q |
234 |
atattctt |
241 |
Q |
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|||||||| |
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|
| T |
26171493 |
atattctt |
26171500 |
T |
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