View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13255_low_18 (Length: 242)

Name: NF13255_low_18
Description: NF13255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13255_low_18
NF13255_low_18
[»] chr1 (2 HSPs)
chr1 (16-228)||(17435791-17436003)
chr1 (60-132)||(16000954-16001027)
[»] chr5 (1 HSPs)
chr5 (51-132)||(6837773-6837855)
[»] chr3 (1 HSPs)
chr3 (51-132)||(22598589-22598671)
[»] chr7 (1 HSPs)
chr7 (51-132)||(22348029-22348111)
[»] chr8 (1 HSPs)
chr8 (52-132)||(306581-306662)


Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 16 - 228
Target Start/End: Original strand, 17435791 - 17436003
Alignment:
Q  16 gtttcaaccaattttaagaacatcaaaactcttgtcattttcgaactcaatgagctcctatatgtgtctaaaacctttccaatgtgctaaatgtgctcta 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17435791 gtttcaaccaattttaagaacatcaaaactcttgtcattttcgaactcaatgagctcctatatgtgtctaaaacctttccaatgtgctaaatgtgctcta 17435890  T
Q  116 agaagcaactgatgatatacatgtgtggcgaaaactctctaaccatttatacgaaaacatgtaacgaaagcagttttgtttctaacaaatgggaatgtca 215  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17435891 agaagcaactgatgatatacatgtgtggccaaaactctctaaccatttatacgaaaacatgtaacgaaagcagttttgtttctaacaaatgggaatgtca 17435990  T
Q  216 aattttgcgtcat 228  Q
    |||||||||||||    
T  17435991 aattttgcgtcat 17436003  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 132
Target Start/End: Complemental strand, 16001027 - 16000954
Alignment:
Q  60 actcaatgagctcctatatgtgtctaaaa-cctttccaatgtgctaaatgtgctctaagaagcaactgatgata 132  Q
    |||||||||||| |||||||||||||||| |||| ||   |||||||||| |||||  ||||||||||||||||    
T  16001027 actcaatgagcttctatatgtgtctaaaatccttccccgggtgctaaatgcgctctccgaagcaactgatgata 16000954  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 51 - 132
Target Start/End: Original strand, 6837773 - 6837855
Alignment:
Q  51 cattttcgaactcaatgagctcctatatgtgtctaaaa-cctttccaatgtgctaaatgtgctctaagaagcaactgatgata 132  Q
    ||||| || ||||||||||||||||||||||||||||| |||| |    |||||||||| |||||  ||||||||||||||||    
T  6837773 catttccggactcaatgagctcctatatgtgtctaaaatccttcctccggtgctaaatgcgctctccgaagcaactgatgata 6837855  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 51 - 132
Target Start/End: Complemental strand, 22598671 - 22598589
Alignment:
Q  51 cattttcgaactcaatgagctcctatatgtgtctaaaa-cctttccaatgtgctaaatgtgctctaagaagcaactgatgata 132  Q
    ||||| || ||||||||||||||||||||||||||||| |||| |    |||||||||| |||||  ||||||||||||||||    
T  22598671 catttccggactcaatgagctcctatatgtgtctaaaatccttcctccggtgctaaatgcgctctccgaagcaactgatgata 22598589  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 132
Target Start/End: Complemental strand, 22348111 - 22348029
Alignment:
Q  51 cattttcgaactcaatgagctcctatatgtgtctaaaa-cctttccaatgtgctaaatgtgctctaagaagcaactgatgata 132  Q
    ||||| || |||||||||||| |||||||||||||||| |||| ||   |||||||||| |||||   |||||||||||||||    
T  22348111 catttccggactcaatgagcttctatatgtgtctaaaatccttcccccagtgctaaatgcgctcttcaaagcaactgatgata 22348029  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 132
Target Start/End: Original strand, 306581 - 306662
Alignment:
Q  52 attttcgaactcaatgagctcctatatgtgtctaaaa-cctttccaatgtgctaaatgtgctctaagaagcaactgatgata 132  Q
    |||| ||||||||||| ||||||||||| |||||||| |||| ||   |||||||||| |||||  |||| |||||||||||    
T  306581 atttccgaactcaatgggctcctatatgggtctaaaatccttcccccggtgctaaatgcgctctccgaagaaactgatgata 306662  T

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