View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13255_low_2 (Length: 708)

Name: NF13255_low_2
Description: NF13255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13255_low_2
NF13255_low_2
[»] chr4 (1 HSPs)
chr4 (10-691)||(53615082-53615763)


Alignment Details
Target: chr4 (Bit Score: 662; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 662; E-Value: 0
Query Start/End: Original strand, 10 - 691
Target Start/End: Complemental strand, 53615763 - 53615082
Alignment:
Q  10 acatcatccaaatatagttagaattcatgaggtatattatacctgctggtgttggaattcttgtgagtcttgaagattcacaatccctttctcactcact 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53615763 acatcatccaaatatagttagaattcatgaggtatattatacctgctggtgttggaattcttgtgagtcttgaagattcacaatccctttctcactcact 53615664  T
Q  110 agtattaatttttgaatgaatttcatcataaaacaggttattggcacaaaaacaaaaatatacattgtgatggaatatgtatcaggaggtcaactattgg 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53615663 agtattaatttttgaatgaatttcatcataaaacaggttattggcacaaaaacaaaaatatacattgtgatggaatatgtatcaggaggtcaactattgg 53615564  T
Q  210 acaaaatagtgagaatcatatcaacaatctctttgttgttcaaatgttgtgtacttacaattataatacttcaattctgaaaattttgtttatgcagtcc 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53615563 acaaaatagtgagaatcatatcaacaatctctttgttgttcaaatgttgtgtacttacaattataatacttcaattctgaaaattttgtttatgcagtcc 53615464  T
Q  310 tattgcaacaagttgaatgaatgtgaggcaagaaaactattccaacaacttattgacgccgtcgactactgccataacaagggagtttatcaccgcgatc 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53615463 tattgcaacaagttgaatgaatgtgaggcaagaaaactattccaacaacttattgacgccgtcgactactgccataacaagggagtttatcaccgcgatc 53615364  T
Q  410 tcaaggtaagttaaaccaatcctgcatttttctttgtttagaaaaacaagttttgaaaccttacaccttttacatgtgtcaatacagccagaaaacttgc 509  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53615363 tcaaggtaagttaaaccaatcctgcatttttctttgtttagaaaaacaagttttgaaaccttacaccttttacatgtgtcaatacagccagaaaacttgc 53615264  T
Q  510 tcctagacagcaagggaaatctaaaagtgtctgattttggattaagtgcactgaataaggttaaaaatttgtttcaaactaatcacgagttcaattgtaa 609  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||    
T  53615263 tcctagacagcaagggaaatctaaaagtgtctgattttggattaagtgcactgaataaggtaaaaaatttgtttcaacctaatcacaagttcaattgtaa 53615164  T
Q  610 gactttttgattggtaacgattaaattttgatacatttgcagcctaatgatgtcctaaacacaaagtgtggatccccgtgtt 691  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||    
T  53615163 gactttttgattggtaacgattaaattttgataaatttgcagcctaataatgtcctaaacacaaagtgtggatccccgtgtt 53615082  T

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