View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13255_low_21 (Length: 226)
Name: NF13255_low_21
Description: NF13255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13255_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 156; Significance: 5e-83; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 19 - 208
Target Start/End: Original strand, 32811950 - 32812135
Alignment:
| Q |
19 |
atagatagatattaaattccctggttgaaacgaaaatatattcaataatgtattaattgattcaaattaacattagttatacactagaaactaatgttat |
118 |
Q |
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| T |
32811950 |
atagatagatataaaat-ccctggttgaaacgaaaatatatt---taatgtattaattgattcaaattaactttagttatatactagaaactaatgttat |
32812045 |
T |
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| Q |
119 |
tactgatttgctttgataggtaacatccttcaagtgtggtggtttcgcatttggcatcacaagaagccatgcagccattgatgggcatag |
208 |
Q |
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| T |
32812046 |
tactgatttgctttgataggtaacatccttcaagtgtggtggtttcgcatttggcatcacaagaagccatgcagccattgatgggcatag |
32812135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 202
Target Start/End: Original strand, 32829599 - 32829662
Alignment:
| Q |
139 |
taacatccttcaagtgtggtggtttcgcatttggcatcacaagaagccatgcagccattgatgg |
202 |
Q |
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| T |
32829599 |
taacatccttcaagtgtggtggtttcgctataggcttcacaacaagccatgtaacctttgatgg |
32829662 |
T |
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