View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13255_low_22 (Length: 213)
Name: NF13255_low_22
Description: NF13255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13255_low_22 |
 | |
|
| [»] scaffold0262 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 166; Significance: 5e-89; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 17 - 198
Target Start/End: Original strand, 33428170 - 33428351
Alignment:
| Q |
17 |
cactttctaccggaaaggatattattcccctaaagactgaaggaacaaagtggtatgtttgtggcatagctgatcactgttcggctcgtcaaatgaagtt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||| |
|
|
| T |
33428170 |
cactttctaccggaaaggatattattcccctaaagactgaagaaacaaagtggtatgtttgtggcatagctgataactgttctgctcgtcacatgaagtt |
33428269 |
T |
|
| Q |
117 |
catcatcactgttctagcagaaagtgcccctgctccttctcttccaccttcttctgatgctcattctgttgtttcatctgtg |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33428270 |
catcatcactgttctagcagaaagtgcccctgctccttctcttccaccttcttctgatgctcattctgttgtttcatctgtg |
33428351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 17 - 195
Target Start/End: Complemental strand, 33416366 - 33416188
Alignment:
| Q |
17 |
cactttctaccggaaaggatattattcccctaaagactgaaggaacaaagtggtatgtttgtggcatagctgatcactgttcggctcgtcaaatgaagtt |
116 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||| |||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
33416366 |
cactttctaccggaaaggatatcattcaactaaaaactgaaggaagaaagtggtatgtttgtggagttgctgatcactgttcggctcgtcaaatgaagtt |
33416267 |
T |
|
| Q |
117 |
catcatcactgttctagcagaaagtgcccctgctccttctcttccaccttcttctgatgctcattctgttgtttcatct |
195 |
Q |
| |
|
|||||||||||||||| ||| |||| ||||||||||||| |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
33416266 |
ggtcatcactgttctagccgaaggtgcacctgctccttctccaccaccttcttctgatgctcactctgttgtttcatct |
33416188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 17 - 195
Target Start/End: Complemental strand, 33410517 - 33410339
Alignment:
| Q |
17 |
cactttctaccggaaaggatattattcccctaaagactgaaggaacaaagtggtatgtttgtggcatagctgatcactgttcggctcgtcaaatgaagtt |
116 |
Q |
| |
|
|||||||||| ||||||||||| |||| ||||| || ||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
33410517 |
cactttctacaggaaaggatatcattcaactaaaaacagaaggaagaaagtggtatgtttgtggagttgctgatcactgttcggctcgtcaaatgaagtt |
33410418 |
T |
|
| Q |
117 |
catcatcactgttctagcagaaagtgcccctgctccttctcttccaccttcttctgatgctcattctgttgtttcatct |
195 |
Q |
| |
|
|||||||||||||||| ||| |||| ||||||||||||| |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
33410417 |
ggtcatcactgttctagccgaaggtgcacctgctccttctccaccaccttcttctgatgctcactctgttgtttcatct |
33410339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 17 - 195
Target Start/End: Complemental strand, 33424419 - 33424241
Alignment:
| Q |
17 |
cactttctaccggaaaggatattattcccctaaagactgaaggaacaaagtggtatgtttgtggcatagctgatcactgttcggctcgtcaaatgaagtt |
116 |
Q |
| |
|
|||||||||| ||||||||||| |||| ||||| || ||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
33424419 |
cactttctacaggaaaggatatcattcaactaaaaacagaaggaagaaagtggtatgtttgtggagttgctgatcactgttcggctcgtcaaatgaagtt |
33424320 |
T |
|
| Q |
117 |
catcatcactgttctagcagaaagtgcccctgctccttctcttccaccttcttctgatgctcattctgttgtttcatct |
195 |
Q |
| |
|
|||||||||||||||| ||| |||| ||||||||||||| |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
33424319 |
ggtcatcactgttctagccgaaggtgcacctgctccttctccaccaccttcttctgatgctcactctgttgtttcatct |
33424241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 17 - 195
Target Start/End: Complemental strand, 33436571 - 33436393
Alignment:
| Q |
17 |
cactttctaccggaaaggatattattcccctaaagactgaaggaacaaagtggtatgtttgtggcatagctgatcactgttcggctcgtcaaatgaagtt |
116 |
Q |
| |
|
|||| ||||| ||||||||||| |||| ||||| || ||||||| ||||||||||||||||||| |||||||||| ||||| |||| ||||||||| || |
|
|
| T |
33436571 |
cactctctacgggaaaggatatcattcaactaaaaacagaaggaagaaagtggtatgtttgtggcgtagctgatcattgttctgctcatcaaatgaaatt |
33436472 |
T |
|
| Q |
117 |
catcatcactgttctagcagaaagtgcccctgctccttctcttccaccttcttctgatgctcattctgttgtttcatct |
195 |
Q |
| |
|
|||||||||||||||||||| | || ||||||||||| | ||| || |||||| ||||||| ||| |||| |||||| |
|
|
| T |
33436471 |
tgtcatcactgttctagcagaaggcgcacctgctccttcccctcctccatcttctaatgctcactctattgtatcatct |
33436393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0262 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0262
Description:
Target: scaffold0262; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 17 - 195
Target Start/End: Original strand, 5206 - 5384
Alignment:
| Q |
17 |
cactttctaccggaaaggatattattcccctaaagactgaaggaacaaagtggtatgtttgtggcatagctgatcactgttcggctcgtcaaatgaagtt |
116 |
Q |
| |
|
|||||||||| ||||||||||| |||| ||||| |||||||||| ||||||||||||||||||| |||||||||| ||||| |||| |||||| ||||| |
|
|
| T |
5206 |
cactttctacaggaaaggatatcattcaactaaaaactgaaggaagaaagtggtatgtttgtggcgtagctgatcattgttctgctcatcaaataaagtt |
5305 |
T |
|
| Q |
117 |
catcatcactgttctagcagaaagtgcccctgctccttctcttccaccttcttctgatgctcattctgttgtttcatct |
195 |
Q |
| |
|
|||||||||||||||||||| | || |||||||||| ||| || |||||| ||||||| ||| |||| |||||| |
|
|
| T |
5306 |
tgtcatcactgttctagcagaaggcgcatctgctccttccactcctccatcttctaatgctcactctattgtatcatct |
5384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University