View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13255_low_4 (Length: 679)
Name: NF13255_low_4
Description: NF13255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13255_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 559; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 23 - 589
Target Start/End: Original strand, 30416954 - 30417520
Alignment:
| Q |
23 |
agaagccagaatcagaacaaagaacagaatcatacacacatatgcagcactcagaaaacaaagacccagtttcttaagcaatactatgctaccataagct |
122 |
Q |
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| T |
30416954 |
agaagccagaatcagaacaaagaacagaatcatacacacatatgcagcactcagaaaacaaagacccagtttcttaagcaatactatgctaccataagct |
30417053 |
T |
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| Q |
123 |
atttgtgaaggagcattgtctttggtttgcccatcatgatggtaggactcagatgtcactgtcagaagagagtagaaaggggaaaagacagaggccatgc |
222 |
Q |
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| T |
30417054 |
atttgtgaaggagcattgtctttggtttgcccatcatgatggtaggactcagatgtcactgtcagaagtgagtagaaaggggaaaagacagaggccatgc |
30417153 |
T |
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| Q |
223 |
tgttgtagagtaagtctgctggtgtaggcaaaacaaatgagtctttttggttttcccccatggagatggatagttaagtttcatagataagatagctaaa |
322 |
Q |
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| T |
30417154 |
tgttgtagagtaagtctgctggtgtaggcaaaacaaatgagtctttttggttttcccccatggagatggatagttaagtttcatagataagatagctaaa |
30417253 |
T |
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| Q |
323 |
actgcagtttagactttagagggagaaattaataaaaattaataagaggcatgagacagatgcaatgttgttgcatgctgtggcagaacacaacacgtgt |
422 |
Q |
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| T |
30417254 |
actgcagtttagactttagagggagaaattaataaaaattaataagaggcatgagacagatgcaatgttgttgcatgctgtggcagaacacaacacgtgt |
30417353 |
T |
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| Q |
423 |
cttttgcatgagaacaagaccaagatgccgtggcaaattggcaatttgcatgagaaagaaacatattgatatacttgcatggtttttctattttagttta |
522 |
Q |
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| T |
30417354 |
cttttgcatgagaacaagaccaagatgccgtggcaaattggcaatttgcatgagaaagaaacatattgatatacttgcatggtttttctattttagttta |
30417453 |
T |
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| Q |
523 |
ttgtatattataaactgggtacagcaaagttggctttttctctgggcttcaatgttgagttttggcc |
589 |
Q |
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| T |
30417454 |
ttgtatattatatactgggtacagcaaagttggctttttctctgggcttcaatgttgagttttggcc |
30417520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 626 - 661
Target Start/End: Original strand, 30417569 - 30417604
Alignment:
| Q |
626 |
gattcacacgattatatacctatctaatgaagctgc |
661 |
Q |
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| T |
30417569 |
gattcacacgattatatacctatctaatgaagctgc |
30417604 |
T |
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