View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13255_low_5 (Length: 538)

Name: NF13255_low_5
Description: NF13255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13255_low_5
NF13255_low_5
[»] chr7 (2 HSPs)
chr7 (199-511)||(2792993-2793312)
chr7 (1-116)||(2793395-2793510)
[»] chr5 (1 HSPs)
chr5 (332-418)||(9121221-9121307)
[»] chr2 (4 HSPs)
chr2 (366-434)||(43920779-43920848)
chr2 (367-446)||(1648024-1648103)
chr2 (367-446)||(11992923-11993002)
chr2 (367-446)||(37520607-37520686)
[»] chr1 (6 HSPs)
chr1 (367-446)||(52920995-52921074)
chr1 (373-413)||(1651627-1651667)
chr1 (367-444)||(4001864-4001941)
chr1 (369-446)||(9599924-9600001)
chr1 (367-448)||(51850775-51850856)
chr1 (367-435)||(32079332-32079400)
[»] chr6 (1 HSPs)
chr6 (332-446)||(20430534-20430648)
[»] chr4 (1 HSPs)
chr4 (1-73)||(48668020-48668092)
[»] scaffold0279 (1 HSPs)
scaffold0279 (367-446)||(18399-18478)
[»] chr3 (1 HSPs)
chr3 (367-446)||(51450766-51450845)
[»] chr8 (1 HSPs)
chr8 (343-399)||(40368695-40368751)


Alignment Details
Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 199 - 511
Target Start/End: Complemental strand, 2793312 - 2792993
Alignment:
Q  199 taaaagcacttatgtataactagttatttcatataatctatatgttgtttt----attacaacaacaacaaca---atcgaacgacaccatagtgttcta 291  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    || |||||||||||||||   ||||||||||||||||||||||||    
T  2793312 taaaagcacttatgtataactagttatttcatataatctatatgttgttttcattataacaacaacaacaacataaatcgaacgacaccatagtgttcta 2793213  T
Q  292 tataaaactgcttgagctatacattgagtgtcgtccaagaaacgacctaatcttcacactaatgcgtattctattcatgtcatagatattggacaaagtt 391  Q
    || |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  2793212 taaaaaactgcttgagctatacaatgagtgtcgtccaagaaacaacctaatcttcacactattgcgtattctattcatgtcatagatattggacaaagtt 2793113  T
Q  392 ttatgtttgctgcccaagcttaacataaccgtctccttttaccctagcttgggactgacaatggaaaacaaacctaaacataggcggaatttgttttcat 491  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  2793112 ttatgtttgctgcccaagcttaacataaccgtctccttttaccctagcttggggccgacaatggaaaacaaacctaaacataggcggaatttgttttcat 2793013  T
Q  492 tataagctattctaaaaaag 511  Q
    ||||||||||||||||||||    
T  2793012 tataagctattctaaaaaag 2792993  T

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Target: chr7; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 2793510 - 2793395
Alignment:
Q  1 aatgatggcaagaaatggattggtgattttatataggaatacaggaagagcctgcaaattggaagtatgaaagaaacaggtgtcaaacagttttttcggt 100  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| ||| ||||| ||||||||||||||||    
T  2793510 aatgatggcaagaaatggattggtgattttatataggaatataggaagagcctgcagattggaagtttgaaagcaacgggtgttaaacagttttttcggt 2793411  T
Q  101 ttaggaatcgatataa 116  Q
    ||||||||||||||||    
T  2793410 ttaggaatcgatataa 2793395  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 332 - 418
Target Start/End: Original strand, 9121221 - 9121307
Alignment:
Q  332 aacgacctaatcttcacactaatgcgtattctattcatgtcatagatattggacaaagttttatgtttgctgcccaagcttaacata 418  Q
    |||||||||  ||| |||||| ||||||||  |||||| ||| | | |||||||||||||||||||||| |||||||||||||||||    
T  9121221 aacgacctagccttaacactattgcgtatttgattcatatcaaaaagattggacaaagttttatgtttgttgcccaagcttaacata 9121307  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 366 - 434
Target Start/End: Original strand, 43920779 - 43920848
Alignment:
Q  366 tcatgtcatagatattggacaaagttttatg-tttgctgcccaagcttaacataaccgtctccttttacc 434  Q
    |||||||||||| |||||||||||||||| | |||||||| |||| |||||| |||| ||||||||||||    
T  43920779 tcatgtcatagagattggacaaagttttacgttttgctgctcaagtttaacacaaccctctccttttacc 43920848  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 367 - 446
Target Start/End: Complemental strand, 1648103 - 1648024
Alignment:
Q  367 catgtcatagatattggacaaagttttatgtttgctgcccaagcttaacataaccgtctccttttaccctagcttgggac 446  Q
    ||||||||||| ||| |||||||||||| ||| |||| | | || ||||| |||| |||||||||||||  |||||||||    
T  1648103 catgtcatagagattcgacaaagttttacgttggctgtcgaggcctaacacaaccctctccttttacccgggcttgggac 1648024  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 367 - 446
Target Start/End: Complemental strand, 11993002 - 11992923
Alignment:
Q  367 catgtcatagatattggacaaagttttatgtttgctgcccaagcttaacataaccgtctccttttaccctagcttgggac 446  Q
    ||||||||||| ||| |||||||||||||||| |||| | | || ||||| |||| ||| |||||||||  |||||||||    
T  11993002 catgtcatagagattcgacaaagttttatgttggctgtcgaggcctaacacaaccctcttcttttacccgggcttgggac 11992923  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 367 - 446
Target Start/End: Complemental strand, 37520686 - 37520607
Alignment:
Q  367 catgtcatagatattggacaaagttttatgtttgctgcccaagcttaacataaccgtctccttttaccctagcttgggac 446  Q
    ||||||||||| ||| |||||||||||| ||| |||| | | || ||||| |||| |||||||||||||  |||||||||    
T  37520686 catgtcatagagattcgacaaagttttacgttggctgtcgaggcctaacacaaccctctccttttacccgggcttgggac 37520607  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 367 - 446
Target Start/End: Complemental strand, 52921074 - 52920995
Alignment:
Q  367 catgtcatagatattggacaaagttttatgtttgctgcccaagcttaacataaccgtctccttttaccctagcttgggac 446  Q
    ||||||||||| ||| |||||||||||||||| |||| | | || ||||| |||| |||||||||||||  |||||||||    
T  52921074 catgtcatagagattcgacaaagttttatgttggctgtcaaggcctaacacaaccctctccttttacccgggcttgggac 52920995  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 373 - 413
Target Start/End: Original strand, 1651627 - 1651667
Alignment:
Q  373 atagatattggacaaagttttatgtttgctgcccaagctta 413  Q
    ||||| || ||||||||||||||||||||||||||||||||    
T  1651627 atagagatcggacaaagttttatgtttgctgcccaagctta 1651667  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 444
Target Start/End: Complemental strand, 4001941 - 4001864
Alignment:
Q  367 catgtcatagatattggacaaagttttatgtttgctgcccaagcttaacataaccgtctccttttaccctagcttggg 444  Q
    ||||||||||| ||| |||||||||||| ||| |||| | | || ||||| |||| |||||||||||||  |||||||    
T  4001941 catgtcatagagattcgacaaagttttacgttggctgtcgaggcctaacacaaccctctccttttacccgggcttggg 4001864  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 446
Target Start/End: Complemental strand, 9600001 - 9599924
Alignment:
Q  369 tgtcatagatattggacaaagttttatgtttgctgcccaagcttaacataaccgtctccttttaccctagcttgggac 446  Q
    ||||||||| ||  |||||||||||| ||| |||| | | || ||||| |||| ||||||||||||| ||||||||||    
T  9600001 tgtcatagagatccgacaaagttttacgttggctgtcgaggcctaacacaaccctctccttttacccgagcttgggac 9599924  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 448
Target Start/End: Complemental strand, 51850856 - 51850775
Alignment:
Q  367 catgtcatagatattggacaaagttttatgtttgctgcccaagcttaacataaccgtctccttttaccctagcttgggactg 448  Q
    ||||||||||| ||| ||| |||||||||||| | || | | || ||||| |||| |||||||||||||  |||||||||||    
T  51850856 catgtcatagagattcgacgaagttttatgttggatgtcgaggcctaacacaaccctctccttttacccaggcttgggactg 51850775  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 367 - 435
Target Start/End: Complemental strand, 32079400 - 32079332
Alignment:
Q  367 catgtcatagatattggacaaagttttatgtttgctgcccaagcttaacataaccgtctccttttaccc 435  Q
    ||||||||||| ||| |||||||||||| ||| |||| | | || ||||| |||| |||||||||||||    
T  32079400 catgtcatagagattcgacaaagttttacgttggctgtcgaggcctaacacaaccctctccttttaccc 32079332  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 332 - 446
Target Start/End: Original strand, 20430534 - 20430648
Alignment:
Q  332 aacgacctaatcttcacactaatgcgtattctattcatgtcatagatattggacaaagttttatgtttgctgcccaagcttaacataaccgtctcctttt 431  Q
    ||||||||||  ||||||||| |  |||||   ||||||||||||| |||  ||||||||||| ||| |||| | | || ||||| |||| |||||||||    
T  20430534 aacgacctaaaattcacactattttgtatttggttcatgtcatagagattcaacaaagttttacgttggctgtcgaggcctaacacaaccctctcctttt 20430633  T
Q  432 accctagcttgggac 446  Q
    |||| ||||||||||    
T  20430634 acccgagcttgggac 20430648  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 48668092 - 48668020
Alignment:
Q  1 aatgatggcaagaaatggattggtgattttatataggaatacaggaagagcctgcaaattggaagtatgaaag 73  Q
    |||||| ||||||||| |||||  || ||||| |||| ||| |||||||||||||| ||||||||| ||||||    
T  48668092 aatgatagcaagaaattgattgaagagtttatctaggtatataggaagagcctgcagattggaagtttgaaag 48668020  T

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Target: scaffold0279 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0279
Description:

Target: scaffold0279; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 367 - 446
Target Start/End: Complemental strand, 18478 - 18399
Alignment:
Q  367 catgtcatagatattggacaaagttttatgtttgctgcccaagcttaacataaccgtctccttttaccctagcttgggac 446  Q
    ||||||||||| ||| |||||||||||| ||| | || | | |||||||| |||| |||||||||||||  |||||||||    
T  18478 catgtcatagagattcgacaaagttttacgttggttgtcgaggcttaacacaaccttctccttttacccgggcttgggac 18399  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 367 - 446
Target Start/End: Original strand, 51450766 - 51450845
Alignment:
Q  367 catgtcatagatattggacaaagttttatgtttgctgcccaagcttaacataaccgtctccttttaccctagcttgggac 446  Q
    |||| |||||||||| |||||||||||| ||| |||| | | || ||||| |||| |||||||||||||  |||||||||    
T  51450766 catgccatagatattcgacaaagttttacgttggctgtcgaggcctaacacaaccctctccttttacccgggcttgggac 51450845  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 343 - 399
Target Start/End: Original strand, 40368695 - 40368751
Alignment:
Q  343 cttcacactaatgcgtattctattcatgtcatagatattggacaaagttttatgttt 399  Q
    |||||||||| || || ||| |||||||||||||| ||||||| || ||||||||||    
T  40368695 cttcacactattgtgtgttcgattcatgtcatagagattggacgaaattttatgttt 40368751  T

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