View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13255_low_8 (Length: 535)
Name: NF13255_low_8
Description: NF13255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13255_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-103; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 260 - 523
Target Start/End: Complemental strand, 35352948 - 35352690
Alignment:
| Q |
260 |
tgatcatagatatttcatatcaaataattattgcatgaaaaaatttgatgatattttgacataaatttgacaaagaaaactaacaagaaataccaattgt |
359 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
35352948 |
tgatcatagatatttcatatcaaataattattacatgaaattttttgatgatattttgacat----ttgacaaagaaaactaacaagaaataccaattgt |
35352853 |
T |
|
| Q |
360 |
aactaacatcgattgttgaatcttttcgcatctgtcttaggctcatgtttgaaattttacaatccgtataaattctattagatttctgctcttatctcgg |
459 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |
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| T |
35352852 |
aactaacatcgattgttgaatcttttcgcatgtgtcttaggctcatgtttgaaattttacaatctgtataaattctattagatttcagctcttatctcgg |
35352753 |
T |
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| Q |
460 |
catgtctcgctcccacccagctaaactgattaaaatactcatgcatttgttaaccaacgcaagt |
523 |
Q |
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||||||||||| |||| |||||||||||| ||||||||| |||| |||||||||||||||||| |
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| T |
35352752 |
catgtctcgcttccactcagctaaactga-taaaatactgatgcgcttgttaaccaacgcaagt |
35352690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 35353467 - 35353296
Alignment:
| Q |
1 |
cgatattgtgagaatatgaactcaaatctttgatgttctcacatttattggcagtcaaattcgaaccctaatttttgtaatttgtattgattatgattga |
100 |
Q |
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| T |
35353467 |
cgatattgtgagaatatgaactcaaatctttgatgttctcacatttattggcagtcaaattcgaaccctaatttttgtaatttgtattgattatgattga |
35353368 |
T |
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| Q |
101 |
tcaattgtgttaaaaaccttttcgnnnnnnntataatgataagaaaaataatggttaattttatccttatat |
172 |
Q |
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| T |
35353367 |
tcaattgtgttaaaaaccttttcgaaaaaaatataatgataagaaaaataatggttaattttatccttatat |
35353296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 182 - 222
Target Start/End: Complemental strand, 35353028 - 35352988
Alignment:
| Q |
182 |
gctagttacaagacaatatacaattatcatagatatatttt |
222 |
Q |
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| T |
35353028 |
gctagttacaagataatatacaattatcatagatatatttt |
35352988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 443 - 523
Target Start/End: Complemental strand, 52690356 - 52690276
Alignment:
| Q |
443 |
ttctgctcttatctcggcatgtctcgctcccacccagctaaactgattaaaatactcatgcatttgttaaccaacgcaagt |
523 |
Q |
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| T |
52690356 |
ttctgctcttctcccagcaagtttcactcccacccaactaaactgacaaaaatactcatgcgttagttaactaacgcaagt |
52690276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 466 - 523
Target Start/End: Complemental strand, 19005028 - 19004971
Alignment:
| Q |
466 |
tcgctcccacccagctaaactgattaaaatactcatgcatttgttaaccaacgcaagt |
523 |
Q |
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|||||| |||||||||||||||| ||||||||| |||| | |||||| ||||||||| |
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| T |
19005028 |
tcgctctcacccagctaaactgaccaaaatactcctgcactagttaactaacgcaagt |
19004971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 443 - 523
Target Start/End: Original strand, 27982477 - 27982557
Alignment:
| Q |
443 |
ttctgctcttatctcggcatgtctcgctcccacccagctaaactgattaaaatactcatgcatttgttaaccaacgcaagt |
523 |
Q |
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|||||||||| || | ||| || ||||||||| |||| |||||||| |||||||||||| || |||||| ||||||||| |
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| T |
27982477 |
ttctgctcttctcccagcaagtttcgctcccatccagtcaaactgatcaaaatactcatgagttagttaactaacgcaagt |
27982557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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