View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13255_low_9 (Length: 514)
Name: NF13255_low_9
Description: NF13255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13255_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 164; Significance: 2e-87; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 19 - 253
Target Start/End: Original strand, 4360145 - 4360380
Alignment:
| Q |
19 |
ctatctgtctaattttaatttaatttttagatttgaaattatgattccttactacttagtgtgtgaatcatc-gatttttgtnnnnnnnnnnttgtgtta |
117 |
Q |
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| T |
4360145 |
ctatctgtctaattttaatttaatttttagatttgaaactatgattccttactacttagtgtgtgaatcatccgatttttgtaaaaaaaaa-ttgtggta |
4360243 |
T |
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| Q |
118 |
tcgttgttaccgtaatagttatggttgtaaatcaaagataaagttactcgagcatctgcgc--tgaggattcgttttcgtaaatatggctactcaagcga |
215 |
Q |
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| T |
4360244 |
tcgttgttaccgtaatagttatggttgtaaatcaaagataaagttactcgagcatctgcgcgctgagg-tacgttttcgtaaatatggctactcaagcga |
4360342 |
T |
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| Q |
216 |
aggttaaattttaaatcttgtgtgctattaagaacatt |
253 |
Q |
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| T |
4360343 |
aggttaaattttaaatcttgtgtgctattaagaacatt |
4360380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 348 - 505
Target Start/End: Original strand, 4360474 - 4360631
Alignment:
| Q |
348 |
tcttaaacaaagttatggaataaactcatgaatgacaattcgataatcataataagtgctcaacaaataatttagtttgactatccctgaaaatgacaac |
447 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
4360474 |
tcttaaacaaagttatggaataaactcatgaaggacaattcgataatcataataagtgctcaacaaataatttagtttgactatccctgaaaatgataac |
4360573 |
T |
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| Q |
448 |
aaacaaaatagagttgttagaagacatagcaaacgtgctcaattatttaactgatgat |
505 |
Q |
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| T |
4360574 |
aaacaaaatagagttgttagaagacatagcaaacgtgctcaattatttaactgatgat |
4360631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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