View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13256_high_2 (Length: 510)
Name: NF13256_high_2
Description: NF13256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13256_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 405; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 21 - 425
Target Start/End: Complemental strand, 47426891 - 47426487
Alignment:
| Q |
21 |
agcaccaaacagcccagaaaagtactacagtgacatgattgaatatatggacccaacaaccttatcaacatctcagcgtcacattattgtgcctcctaga |
120 |
Q |
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| T |
47426891 |
agcaccaaacagcccagaaaagtactacagtgacatgattgaatatatggacccaacaaccttatcaacatctcagcgtcacattattgtgcctcctaga |
47426792 |
T |
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| Q |
121 |
aaatcatggtcatcaccaagttacatgaacaagacagaatcttctagggcaaaaacaaggtctattagtgaaccaagacaaagacctaaacaaggaacag |
220 |
Q |
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| T |
47426791 |
aaatcatggtcatcaccaagttacatgaacaagacagaatcttctagggcaaaaacaaggtctattagtgaaccaagacaaagacctaaacaaggaacag |
47426692 |
T |
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| Q |
221 |
aacagagaaacaagtctatagaatttgcttctttgaagcaaaatatgttgtcaaactcagcacgctatgatcattgggttgttaattcaatgaaggagag |
320 |
Q |
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| T |
47426691 |
aacagagaaacaagtctatagaatttgcttctttgaagcaaaatatgttgtcaaactcagcacgctatgatcattgggttgttaattcaatgaaggagag |
47426592 |
T |
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| Q |
321 |
taagcatgattcctttggtagctatgcggttactactagtgatgattcctattattactcgtgaattcttgaatggtacaaagtaagcaaagattcaata |
420 |
Q |
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| T |
47426591 |
taagcatgattcctttggtagctatgcggttactactagtgatgattcctattattactcgtgaattcttgaatggtacaaagtaagcaaagattcaata |
47426492 |
T |
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| Q |
421 |
ttgaa |
425 |
Q |
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| T |
47426491 |
ttgaa |
47426487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 422 - 475
Target Start/End: Complemental strand, 47426457 - 47426404
Alignment:
| Q |
422 |
tgaaattggaatttttgtaacaaaacttgatgtatgttttgtggcaatgctata |
475 |
Q |
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| T |
47426457 |
tgaaattggaatttttgtaacaaaacttgatgtatgttttgtagcaatgctata |
47426404 |
T |
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