View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13256_low_8 (Length: 262)
Name: NF13256_low_8
Description: NF13256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13256_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 6e-89; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 45 - 255
Target Start/End: Original strand, 3746855 - 3747067
Alignment:
| Q |
45 |
attcaactcataaatttttaattcaaatgaaactctatcagtcactacaactccaggtgacactattttatttaaattgaatagagcatttatcactaca |
144 |
Q |
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| T |
3746855 |
attcaactcataaatttttaattcaaatgaaactctatcagtcactacaactccaggtgacactattttatttaaattgaatagaacatttatcactaca |
3746954 |
T |
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| Q |
145 |
tatagaacaatagagtctggaattaaaaacactaatatactaataagcacattcattagttagt--tactaatgtcactaccaccttaaactagtgaatg |
242 |
Q |
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| T |
3746955 |
tatagaacaatagagtctggaattaaaaagacgaatatactaataagcacattcattagttactaatggcactatcactaccaccttaaactagtgaatg |
3747054 |
T |
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| Q |
243 |
actttcctctgtg |
255 |
Q |
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| T |
3747055 |
actttcctctgtg |
3747067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 3746789 - 3746828
Alignment:
| Q |
1 |
tgagaaaacacataggaacaaattgatccaggtctaaatg |
40 |
Q |
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| T |
3746789 |
tgagaaaacacataggagcaaattgatccaggtctaaatg |
3746828 |
T |
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