View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13257_low_1 (Length: 582)
Name: NF13257_low_1
Description: NF13257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13257_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 540; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 18 - 565
Target Start/End: Complemental strand, 43619369 - 43618822
Alignment:
| Q |
18 |
cataggtgatataagatgctaagtagaaattaatgatttaccgaatcataccaatttagctagatgagcataaaacaaagcagatagaggtgtttgctca |
117 |
Q |
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| T |
43619369 |
cataggtgatataagatgctaagtagaaattaatgatttaccgaatcataccaatttagctagatgagcataaaacaaagcagatagaggtgtttgctca |
43619270 |
T |
|
| Q |
118 |
gcaggtttgacgaccatggtgcacccagcagctaagcaagggctaaccttgacaaagaacagggaagtgggaaagttccaaggaataatgtgtccaacaa |
217 |
Q |
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| T |
43619269 |
gcaggtttgacgaccatggtgcacccagcagctaagcaagggctaaccttgacaaagaacagggaagtgggaaagttccaaggaataatgtgtccaacaa |
43619170 |
T |
|
| Q |
218 |
caccaattggttccatcaatgtataagcatggaactctcttgcaacttttaatacctctccatgaattttatcagctgcacctgcatagtaacgaagtgt |
317 |
Q |
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| T |
43619169 |
caccaattggttccatcaatgtataagcatggaactctcttgcaacttttaatacctctccatgaattttatcagctgcacctgcatagtaacgaagtgt |
43619070 |
T |
|
| Q |
318 |
atttgctgctgagggaatgtcaagagccttacacatatggtacaactttcctgcatcaatggcatcaagtgccgctagctcttctatgttttcatcaatt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
43619069 |
atttgctgctgagggaatgtcaagagccttacacatatggtacaactttcctgcatcaatggcatcaagtgctgctagctcttctatgttttcatcaatt |
43618970 |
T |
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| Q |
418 |
aggtctgcaaatttcatcataagttttgctctttcctggtcaacatatatgacttgtcaattttaacatgctgctaaataagacgaaagtaacataaggg |
517 |
Q |
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| T |
43618969 |
aggtccgcaaatttcatcataagttttgctctttcctggtcaacatatatgacttgtcaattttaacatgctgctaaataagacgaaagtaacataaggg |
43618870 |
T |
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| Q |
518 |
aagagaggtgcatcaacccttaaacaaaaatttcttcattgcaatatt |
565 |
Q |
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| T |
43618869 |
aagagaggtgcatcaacccttaaacaaaaatttcttcattgcaatatt |
43618822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 73 - 437
Target Start/End: Complemental strand, 43626692 - 43626328
Alignment:
| Q |
73 |
ttagctagatgagcataaaacaaagcagatagaggtgtttgctcagcaggtttgacgaccatggtgcacccagcagctaagcaagggctaaccttgacaa |
172 |
Q |
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||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||| ||| | |
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| T |
43626692 |
ttagctagatgggcataaaacaaagcagaaagaggtgtttgttcagcaggtttgagaaccatggtgcacccagcagctaaggaagggctaactttggtga |
43626593 |
T |
|
| Q |
173 |
agaacagggaagtgggaaagttccaaggaataatgtgtccaacaacaccaattggttccatcaatgtataagcatggaactctcttgcaacttttaatac |
272 |
Q |
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| T |
43626592 |
agaaaaccatagtgggagcattccatggaatgatgtgtcccacaacaccaattggttccatcagtgtgtatgcatggaattggccagaagattttaatac |
43626493 |
T |
|
| Q |
273 |
ctctccatgaattttatcagctgcacctgcatagtaacgaagtgtatttgctgctgagggaatgtcaagagccttacacatatggtacaactttcctgca |
372 |
Q |
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||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||| |||| |||||| ||| ||||| ||| || ||| |
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| T |
43626492 |
ctcaccatgaattttatcagcagcacctgcatagtaacgtagtgtatttgctgctgaaggaatttcaaaagccttgttgataaagtacaccttgccagca |
43626393 |
T |
|
| Q |
373 |
tcaatggcatcaagtgccgctagctcttctatgttttcatcaattaggtctgcaaatttcatcat |
437 |
Q |
| |
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| T |
43626392 |
tcaattgcatctaatgttgctagttcttctatgttttcatcaattagttctgcaaatttcatcat |
43626328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 73 - 455
Target Start/End: Original strand, 32408372 - 32408754
Alignment:
| Q |
73 |
ttagctagatgagcataaaacaaagcagatagaggtgtttgctcagcaggtttgacgaccatggtgcacccagcagctaa-gcaagggctaaccttgaca |
171 |
Q |
| |
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||||| ||||||||||||||||||||||| ||||||||||| |||||||| || | ||||| || || |||||||| || ||| | || |||||| || |
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| T |
32408372 |
ttagcaagatgagcataaaacaaagcagagagaggtgtttgttcagcaggcttaagaaccatagtacaaccagcagccaaagcaggagc-aaccttagca |
32408470 |
T |
|
| Q |
172 |
aagaacagggaagtgggaaagttccaaggaataatgtgtccaacaacaccaattggttccatcaatgtataagcatggaactctcttgcaacttttaata |
271 |
Q |
| |
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|||| | | | ||||| ||||||||||||||||||||||| ||||| ||||| |||||||| ||||| || || ||||| | ||| |||||| | |
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| T |
32408471 |
gcaaacatagtactaggaaaattccaaggaataatgtgtccaacgacaccgattggctccatcaaagtatatgcgtgcaactcccgagcaggttttaaaa |
32408570 |
T |
|
| Q |
272 |
cctctccatgaattttatcagctgcacctgcatagtaacgaagtgtatttgctgctgagggaatgtcaagagccttacacatatggtacaactttcctgc |
371 |
Q |
| |
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||| || ||||||||||| || ||||| ||||||||||| | | |||||||| || |||||||||| ||| || || | | ||| | ||||| || |
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| T |
32408571 |
ccttgccgtgaattttatccgcagcaccggcatagtaacgtattatatttgctactccaggaatgtcaacagctttgcagaaagtgtatagttttccagc |
32408670 |
T |
|
| Q |
372 |
atcaatggcatcaagtgccgctagctcttctatgttttcatcaattaggtctgcaaatttcatcataagttttgctctttcctg |
455 |
Q |
| |
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||| || | ||| | ||| |||| ||||||||||||| |||||||| |||||| |||||| ||| | |||||||||| |||| |
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| T |
32408671 |
atctattgtatctaatgctgctatttcttctatgttttgatcaattaagtctgcccatttcagcattatttttgctcttacctg |
32408754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 103 - 242
Target Start/End: Complemental strand, 32433421 - 32433282
Alignment:
| Q |
103 |
agaggtgtttgctcagcaggtttgacgaccatggtgcacccagcagctaagcaagggctaaccttgacaaagaacagggaagtgggaaagttccaaggaa |
202 |
Q |
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|||||||||||||||||||| || | ||||| || || |||||||| || ||||| | |||| ||||||||| ||| || || |||||||| | |
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| T |
32433421 |
agaggtgtttgctcagcaggcttaagaaccatagtacaaccagcagccaaacaaggagcagccttagcaaagaacataatagttgggaaattccaaggta |
32433322 |
T |
|
| Q |
203 |
taatgtgtccaacaacaccaattggttccatcaatgtata |
242 |
Q |
| |
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| T |
32433321 |
taatgtgtccaacaacaccaataggttccatcaaagtata |
32433282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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