View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13257_low_2 (Length: 410)

Name: NF13257_low_2
Description: NF13257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13257_low_2
NF13257_low_2
[»] chr4 (1 HSPs)
chr4 (14-328)||(42202120-42202434)
[»] chr2 (2 HSPs)
chr2 (21-153)||(12523251-12523383)
chr2 (226-328)||(12523418-12523521)
[»] chr8 (2 HSPs)
chr8 (21-153)||(32060129-32060261)
chr8 (227-328)||(32060297-32060399)
[»] chr7 (1 HSPs)
chr7 (21-153)||(13926890-13927022)


Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 14 - 328
Target Start/End: Original strand, 42202120 - 42202434
Alignment:
Q  14 atatctaaataattatatccattaaatattattcattgatttaatactaattcatagaaataatattttaattcccaattcagtaccatttctccttttc 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  42202120 atatctaaataattatatccattaaatattattcattgatttaatactaattcatagaaataatattttaatttccaattcagtaccatttctccttttc 42202219  T
Q  114 ctgtttannnnnnnaatctccaatttggacagtcttaggaaagttaggaactcaattacctgaactacaaaacaaggattcattttataaatttagacat 213  Q
    |||||||       |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42202220 ctgtttatttttttaatctctaatttggacagtcttaggaaagttaggaactcaattacctgaactacaaaacaaggattcattttataaatttagacat 42202319  T
Q  214 tttcatttcctttgtaaactccaaaaaatcaattttcactctttctttccacacaaaatattttctttctattttctgataaccagactatta-ttttcc 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| ||||||    
T  42202320 tttcatttcctttgtaaactccaaaaaatcaattttcactctttctttctac-caaaatattttctttctattttctgataaccagactattatttttcc 42202418  T
Q  313 tctttcaaattgtaga 328  Q
    ||||||||| ||||||    
T  42202419 tctttcaaactgtaga 42202434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 108; Significance: 4e-54; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 21 - 153
Target Start/End: Original strand, 12523251 - 12523383
Alignment:
Q  21 aataattatatccattaaatattattcattgatttaatactaattcatagaaataatattttaattcccaattcagtaccatttctccttttcctgttta 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12523251 aataattatatccattaaatattattcattgatttaatactaattcatagaaataatattttaattcccaattcagtaccatttctccttttcctgttta 12523350  T
Q  121 nnnnnnnaatctccaatttggacagtcttagga 153  Q
           |||||||||||||||| |||||||||    
T  12523351 tttttttaatctccaatttggacggtcttagga 12523383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 226 - 328
Target Start/End: Original strand, 12523418 - 12523521
Alignment:
Q  226 tgtaaactccaaaaaatcaattttcactctttctttccacacaaaatattttctttctattttctgataaccagactatta-ttttcctctttcaaattg 324  Q
    ||||||||||||||| ||||||||||||||||||||| | |||| |||||||||||||||||||| | ||||||| ||||| |||||||||||||||||     
T  12523418 tgtaaactccaaaaattcaattttcactctttctttctatacaatatattttctttctattttctcaaaaccagaatattatttttcctctttcaaattt 12523517  T
Q  325 taga 328  Q
    ||||    
T  12523518 taga 12523521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 21 - 153
Target Start/End: Original strand, 32060129 - 32060261
Alignment:
Q  21 aataattatatccattaaatattattcattgatttaatactaattcatagaaataatattttaattcccaattcagtaccatttctccttttcctgttta 120  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  32060129 aataattatatccattaaatattattaattgatttaatactaattcatagaaataatattttaattccctattcagtaccatttctccttttcctgttta 32060228  T
Q  121 nnnnnnnaatctccaatttggacagtcttagga 153  Q
           ||||||||||||||||||||||||||    
T  32060229 tttttttaatctccaatttggacagtcttagga 32060261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 227 - 328
Target Start/End: Original strand, 32060297 - 32060399
Alignment:
Q  227 gtaaactccaaaaaatcaattttcactctttctttccacacaaaatattttctttctattttctgataaccagactatta-ttttcctctttcaaattgt 325  Q
    |||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||||||||| | ||||||| ||||| ||||||||||||||||| |    
T  32060297 gtaaactccaaaaattcaattttcactctttctttctacacaatatattttctttctattttctcaaaaccagaatattatttttcctctttcaaatttt 32060396  T
Q  326 aga 328  Q
    |||    
T  32060397 aga 32060399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 21 - 153
Target Start/End: Complemental strand, 13927022 - 13926890
Alignment:
Q  21 aataattatatccattaaatattattcattgatttaatactaattcatagaaataatattttaattcccaattcagtaccatttctccttttcctgttta 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  13927022 aataattatatccattaaatattattcattgatttaatactaattcatagaaataatattttaattccctattcagtaccatttctccttttcctgttta 13926923  T
Q  121 nnnnnnnaatctccaatttggacagtcttagga 153  Q
           |||||||||||||||| |||||||||    
T  13926922 tttttttaatctccaatttggacggtcttagga 13926890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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