View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13257_low_3 (Length: 402)
Name: NF13257_low_3
Description: NF13257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13257_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 10 - 386
Target Start/End: Original strand, 29464910 - 29465279
Alignment:
| Q |
10 |
tcacagagacagtaattgcattgttgatcttctcactttcttgatgggaagagcatcaaattaacaaccttcttctttaatgtattcttcatattgtaaa |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29464910 |
tcacagagacagtaattgcattgttgatcttctcactttcttgatgggaagagcatcaaattaacaaccttcttctttaatgtattcttcatattgtaaa |
29465009 |
T |
|
| Q |
110 |
cacaagaatctaatgcactcattaccttggccttccataagaattgcatatcttccacatggtatttctcagcttctttaatcattttttcaatttctaa |
209 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29465010 |
cacaagaatctaatgcactcattacattggccttccttacgaattgcatatcttccacatggtatttctcagcttctttaatcattttttcaatttctaa |
29465109 |
T |
|
| Q |
210 |
cgttgacaacctttctttgccattagtaatggcgatcgcattcatattgtcagtagatatttccttagctgtaacagttaggatgccattttcatcaacg |
309 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
29465110 |
cgttgataacctttctttgccattagtaatggtgatcacattcatattgtcagtagatatttccttagcagtaacagttaggatgccattttcatcaa-- |
29465207 |
T |
|
| Q |
310 |
gaaattggaaaagcatacctccaagggctggccacggggacatggaagacaaggaatcccaaatgaaccaagcagat |
386 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
29465208 |
-----tggaaaagcatacctccaagggctggccacggggacatggaagacaaggagtcccaaatgaaccaagcagat |
29465279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 20 - 208
Target Start/End: Complemental strand, 29214690 - 29214500
Alignment:
| Q |
20 |
agtaattgcattgttgatcttctcactttcttgatgggaagagcatcaaattaacaaccttctt-ctttaatgtattcttcatattgtaaacacaagaat |
118 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| ||| ||||| |||||||||||||| |||| |||||| ||||| |||||||||||||||||||||| |
|
|
| T |
29214690 |
agtaattacattgttgatcttctcactttcttgagggggagagcttcaaattaacaaccgtctttctttaaagtatttttcatattgtaaacacaagaat |
29214591 |
T |
|
| Q |
119 |
ctaatgcactcattaccttggccttccataagaattgcatatcttccacatggtatttctcagcttctttaatc-attttttcaatttcta |
208 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
29214590 |
ctaatgcactcgttaccttggccttccttaagaattgcatatcttccacatggtatttctcagcttctttaatcaattttttcaatttcta |
29214500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 21 - 305
Target Start/End: Complemental strand, 4679649 - 4679366
Alignment:
| Q |
21 |
gtaattgcattgttgatcttctcactttcttgatgggaagagcatcaaattaacaaccttcttctttaatgtattcttcatattgtaaacacaagaatct |
120 |
Q |
| |
|
|||||||||| ||||||||| |||||||| | | || |||| | ||||||||| ||||||||||||| | |||||| ||||||||||||||| | || |
|
|
| T |
4679649 |
gtaattgcatcgttgatcttttcactttcatcacaaga-gagctttaaattaacatccttcttctttaaagcattcttgatattgtaaacacaaaattcc |
4679551 |
T |
|
| Q |
121 |
aatgcactcattaccttggccttccataagaattgcatatcttccacatggtatttctcagcttctttaatcattttttcaatttctaacgttgacaacc |
220 |
Q |
| |
|
||||||||||||||||| ||||||| ||| |||| | |||||||| | | |||||||||||||||| ||||| ||||| || || || |||| ||||| |
|
|
| T |
4679550 |
aatgcactcattaccttagccttccttaaaaatttcttatcttcctcgcgatatttctcagcttcttcaatcagttttttaacttgaaatgttgtcaacc |
4679451 |
T |
|
| Q |
221 |
tttctttgccattagtaatggcgatcgcattcatattgtcagtagatatttccttagctgtaacagttaggatgccattttcatc |
305 |
Q |
| |
|
||||||| |||| || |||| |||| ||| |||| | ||||| ||||| ||||| | |||||||||| |||||||| |||| |
|
|
| T |
4679450 |
tttctttttcattggttatggtgatcttgttcgtatttcctgtagacatttctttagcagaaacagttagggtgccatttgcatc |
4679366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 233
Target Start/End: Original strand, 15594189 - 15594319
Alignment:
| Q |
103 |
ttgtaaacacaagaatctaatgcactcattaccttggccttccataagaattgcatatcttccacatggtatttctcagcttctttaatcattttttcaa |
202 |
Q |
| |
|
||||||||||| |||||||||| ||||||||| ||||||| || ||||| | |||||| || | |||| ||| ||||||| ||||||||||| || |
|
|
| T |
15594189 |
ttgtaaacacagtcatctaatgcattcattacctccgccttccttaggaatttctcatcttcagcacgatattcctcggcttcttgaatcatttttttaa |
15594288 |
T |
|
| Q |
203 |
tttctaacgttgacaacctttctttgccatt |
233 |
Q |
| |
|
|||| | | |||||||||||||||| |||| |
|
|
| T |
15594289 |
tttcatatgctgacaacctttctttgtcatt |
15594319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 20 - 387
Target Start/End: Complemental strand, 10495470 - 10495111
Alignment:
| Q |
20 |
agtaattgcattgttgatcttctcactttcttgatgggaagagcatcaaattaacaaccttcttctttaatgtattcttcatattgtaaacacaagaatc |
119 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||| ||| ||| || | |||||| ||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
10495470 |
agtaattgcattgctgatcttctcaatttcttgagcgga-gaggatgagattaacgtccttcttctttaaagtgttcttcatattgtaaacacaagaatc |
10495372 |
T |
|
| Q |
120 |
taatgcactcattaccttggccttccataagaattgcatatcttccacatggtatttctcagcttctttaatcattttttcaatttctaacgttgacaac |
219 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||| |||||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
10495371 |
taatgcactcattaccttggccttccttaagaatttcatatcttcgacatggtatttcttagcttctttaatcatttttttaatttctaacattgacaac |
10495272 |
T |
|
| Q |
220 |
ctttctttgccattagtaatggcgatcgcattcatattgtcagtagatatttccttagctgtaacagttaggatgccattttcatcaacggaaattggaa |
319 |
Q |
| |
|
||||||||| |||||||||||| |||||| ||||||||| | |||||||| |||||||| |||||||| ||||||||||||||||||| ||||| |
|
|
| T |
10495271 |
ctttctttgtcattagtaatggtgatcgcgttcatattgcctgtagatatatccttagcagtaacagtcaggatgccattttcatcaa-------tggaa |
10495179 |
T |
|
| Q |
320 |
aagcatacctccaagggctggccacggggacatggaagacaaggaatcccaaatgaaccaagcagatt |
387 |
Q |
| |
|
|||||||||||||||||||||||||| |||| || || | || || | ||||||||||||| ||||| |
|
|
| T |
10495178 |
aagcatacctccaagggctggccacgaggacctgaaacataaccaagcgcaaatgaaccaagtagatt |
10495111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 387
Target Start/End: Original strand, 8666486 - 8666847
Alignment:
| Q |
18 |
acagtaattgcattgttgatcttctcactttcttgatgggaagagcatcaaattaacaaccttcttctttaatgtattcttcatattgtaaacacaagaa |
117 |
Q |
| |
|
||||||||||||||||||||||| || |||||||| |||| ||| |||| ||||||| ||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
8666486 |
acagtaattgcattgttgatctttgcaatttcttgagggga-gagaatcagattaacatccttcttctttaaagccttcttcatattgtaaacacaagaa |
8666584 |
T |
|
| Q |
118 |
tctaatgcactcattaccttggccttccataagaattgcatatcttccacatggtatttctcagcttctttaatcattttttcaatttctaacgttgaca |
217 |
Q |
| |
|
|||||| ||| ||||||||||||| | | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||| |
|
|
| T |
8666585 |
tctaattcacacattaccttggcccttcttaaaaattgcatatcttccacatggtatttctcagcttctttaatcattttttcaatgtcgaacattgaca |
8666684 |
T |
|
| Q |
218 |
acctttctttgccattagtaatggcgatcgcattcatattgtcagtagatatttccttagctgtaacagttaggatgccattttcatcaacggaaattgg |
317 |
Q |
| |
|
||||||||||| |||| || |||| |||| ||||||||| | || ||||||||| |||| |||||||| ||||| ||||||||||||| | | |
|
|
| T |
8666685 |
acctttctttgtcattggttatggtgatcatgttcatattgcctgtggatatttccctagcagtaacagtcaggataccattttcatcaa-------ttg |
8666777 |
T |
|
| Q |
318 |
aaaagcatacctccaagggctggccacggggacatggaagacaaggaatcccaaatgaaccaagcagatt |
387 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
8666778 |
aaaagcatacctccaagggctggccacggggacctggaagacaacgaagcccaaatgaaccaagcagatt |
8666847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 20 - 356
Target Start/End: Complemental strand, 13334464 - 13334136
Alignment:
| Q |
20 |
agtaattgcattgttgatcttctcactttcttgatgggaagagcatcaaattaacaaccttcttctttaatgtattcttcatattgtaaacacaagaatc |
119 |
Q |
| |
|
||||||||||||| ||||||||| | |||||||| |||| ||| || | |||||| | ||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
13334464 |
agtaattgcattgctgatcttcttaatttcttgagggga-gaggatgagattaacgtctttcttctttaaagtgttcttcatattgtaaacacaagaatc |
13334366 |
T |
|
| Q |
120 |
taatgcactcattaccttggccttccataagaattgcatatcttccacatggtatttctcagcttctttaatcattttttcaatttctaacgttgacaac |
219 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||| | ||||||| |||||||||| || ||||||||||||||||||||||||||||||| |||| ||| |
|
|
| T |
13334365 |
taatgcattcattaccttggccttccttaagaatttcttatcttcgacatggtattccttagcttctttaatcattttttcaatttctaacattgataac |
13334266 |
T |
|
| Q |
220 |
ctttctttgccattagtaatggcgatcgcattcatattgtcagtagatatttccttagctgtaacagttaggatgccattttcatcaacggaaattggaa |
319 |
Q |
| |
|
||||||||| |||||||||||| |||||| ||||||||| | |||||||| |||||||| ||||| || ||||||||||||||||||| ||||| |
|
|
| T |
13334265 |
ctttctttgtcattagtaatggtgatcgcgttcatattgcctgtagatatatccttagcagtaaccgtcaggatgccattttcatcaa-------tggaa |
13334173 |
T |
|
| Q |
320 |
aagcatacctccaagggctggccacggggacatggaa |
356 |
Q |
| |
|
|||||||||||||||||||| ||||| |||| ||||| |
|
|
| T |
13334172 |
aagcatacctccaagggctgaccacgcggacctggaa |
13334136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 18 - 295
Target Start/End: Complemental strand, 8672170 - 8671894
Alignment:
| Q |
18 |
acagtaattgcattgttgatcttctcactttcttgatgggaagagcatcaaattaacaaccttcttctttaatgtattcttcatattgtaaacacaagaa |
117 |
Q |
| |
|
||||||||||||||||||||||| || |||||||| |||| ||| |||| ||||||| ||||||| ||| | |||||||||||||||||||||||| |
|
|
| T |
8672170 |
acagtaattgcattgttgatctttgcaatttcttgagggga-gagaatcagattaacattgttcttctctaaagcgttcttcatattgtaaacacaagaa |
8672072 |
T |
|
| Q |
118 |
tctaatgcactcattaccttggccttccataagaattgcatatcttccacatggtatttctcagcttctttaatcattttttcaatttctaacgttgaca |
217 |
Q |
| |
|
|||||||||| ||||||||||||| | | ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||| |||||| |
|
|
| T |
8672071 |
tctaatgcacacattaccttggcccttcttaaaaattgcatatcttccacatgatatttctcagcttctttaatcattttttcaatgtcgaacattgaca |
8671972 |
T |
|
| Q |
218 |
acctttctttgccattagtaatggcgatcgcattcatattgtcagtagatatttccttagctgtaacagttaggatgc |
295 |
Q |
| |
|
|||| |||||| |||||||||| ||| ||||| |||||| | || ||||||||| |||| |||||||||||||||| |
|
|
| T |
8671971 |
acctgtctttgttgttagtaatggtgatagcatttatattgcctgtggatatttccctagcagtaacagttaggatgc |
8671894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 22 - 387
Target Start/End: Original strand, 8653518 - 8653875
Alignment:
| Q |
22 |
taattgcattgttgatcttctcactttcttgatgggaagagcatcaaattaacaaccttcttctttaatgtattcttcatattgtaaacacaagaatcta |
121 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| |||| ||| || | || |||| ||||| | || || | | |||| |||||||||||||||||||| | |
|
|
| T |
8653518 |
taattgcattgttgatctgctcactttcttgagggga-gaggattagatcaacatccttcatattcaaagcactctttatattgtaaacacaagaatcca |
8653616 |
T |
|
| Q |
122 |
atgcactcattaccttggccttccataagaattgcatatcttccacatggtatttctcagcttctttaatcattttttcaatttctaacgttgacaacct |
221 |
Q |
| |
|
|||| || ||||| |||||||||| || |||| ||||||||||||| |||||||||||||||||| |||| ||||||||||||| ||| |||||||||| |
|
|
| T |
8653617 |
atgcgcttattactttggccttcctcaaaaatttcatatcttccacacggtatttctcagcttcttcaatctttttttcaatttcaaactttgacaacct |
8653716 |
T |
|
| Q |
222 |
ttctttgccattagtaatggcgatcgcattcatattgtcagtagatatttccttagctgtaacagttaggatgccattttcatcaacggaaattggaaaa |
321 |
Q |
| |
|
|||||| ||||||| |||| |||| | |||| | | |||| | || |||||| | | |||||||| ||| ||||||||||||| ||||||| |
|
|
| T |
8653717 |
ttctttctcattagtgatggtgatctcgttcagaattccagtggtgatatccttaccagaaacagttaagataccattttcatcaa-------tggaaaa |
8653809 |
T |
|
| Q |
322 |
gcatacctccaagggctggccacggggacatggaagacaaggaatcccaaatgaaccaagcagatt |
387 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||| |||| || |||| ||||||||||||| |
|
|
| T |
8653810 |
gcatacctccaagggctgaccacggggacctggaaggcaagaaagtgtaaataaaccaagcagatt |
8653875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 25 - 304
Target Start/End: Original strand, 8658437 - 8658715
Alignment:
| Q |
25 |
ttgcattgttgatcttctcactttcttgatgggaagagcatcaaattaacaaccttcttctttaatgtattcttcatattgtaaacacaagaatctaatg |
124 |
Q |
| |
|
|||||||||||||||| || |||||| | |||| ||| | ||||||||| ||||||| ||||| | |||||||| |||||||||||| |||| || |
|
|
| T |
8658437 |
ttgcattgttgatcttttccctttctccacggga-gaggtttaaattaacatccttcttttttaacgcattcttcactttgtaaacacaataatccaaat |
8658535 |
T |
|
| Q |
125 |
cactcattaccttggccttccataagaattgcatatcttccacatggtatttctcagcttctttaatcattttttcaatttctaacgttgacaacctttc |
224 |
Q |
| |
|
|| ||||||| |||||||||| ||| |||| | ||||||||| | ||||| |||||||||||| ||||||||| | |||||| || |||||||| ||||| |
|
|
| T |
8658536 |
cattcattactttggccttccttaaaaattccttatcttccatacggtatctctcagcttcttcaatcattttgttaatttcaaatgttgacaatctttc |
8658635 |
T |
|
| Q |
225 |
tttgccattagtaatggcgatcgcattcatattgtcagtagatatttccttagctgtaacagttaggatgccattttcat |
304 |
Q |
| |
|
||| |||| | |||| |||| |||||||| | | ||||||||||||||| | ||| |||| ||||||||||||| |
|
|
| T |
8658636 |
tttttcattgtttatggtgatctggttcatatttcctgaagatatttccttagccgaaactgttaaaatgccattttcat |
8658715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 21 - 304
Target Start/End: Original strand, 1300528 - 1300810
Alignment:
| Q |
21 |
gtaattgcattgttgatcttctcactttcttgatgggaagagcatcaaattaacaaccttcttctttaatgtattcttcatattgtaaacacaagaatct |
120 |
Q |
| |
|
|||||||||||||||||||| || ||||||| | |||| ||| | ||||||||| ||||||||||||| | |||||||| |||||||||||| |||| |
|
|
| T |
1300528 |
gtaattgcattgttgatcttttccctttctttacggga-gagatttaaattaacatccttcttctttaaggcattcttcactttgtaaacacaataatcc |
1300626 |
T |
|
| Q |
121 |
aatgcactcattaccttggccttccataagaattgcatatcttccacatggtatttctcagcttctttaatcattttttcaatttctaacgttgacaacc |
220 |
Q |
| |
|
|| || ||||||| |||||||| ||| || | | ||||||||| |||||||||||||| ||| ||||||||| | |||||| || |||||||| | |
|
|
| T |
1300627 |
aaatcattcattactgtggccttctttaaaaacttcttatcttccatgtggtatttctcagcatctgcaatcattttgttaatttcaaatgttgacaatc |
1300726 |
T |
|
| Q |
221 |
tttctttgccattagtaatggcgatcgcattcatattgtcagtagatatttccttagctgtaacagttaggatgccattttcat |
304 |
Q |
| |
|
||||||| |||| | |||| |||| |||| |||| | |||||||||||||| || | ||| |||| ||||||||||||| |
|
|
| T |
1300727 |
tttctttttcattgttgatggtgatctgattcgtatttcctgtagatatttccttggcagaaactgttaaaatgccattttcat |
1300810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 23 - 168
Target Start/End: Original strand, 8653261 - 8653405
Alignment:
| Q |
23 |
aattgcattgttgatcttctcactttcttgatgggaagagcatcaaattaacaaccttcttctttaatgtattcttcatattgtaaacacaagaatctaa |
122 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||| || || | ||||||| ||||| | || || | |||| | ||||| | ||| |||||||| || |
|
|
| T |
8653261 |
aattgcattgttgatcttttcactttcttgagggga-gatgattagattaacatccttcgtattcaaagcattcgttatattcttaacgcaagaatccaa |
8653359 |
T |
|
| Q |
123 |
tgcactcattaccttggccttccataagaattgcatatcttccaca |
168 |
Q |
| |
|
||||||||||||| ||||||||| ||| |||| ||||||||||||| |
|
|
| T |
8653360 |
tgcactcattaccgtggccttccttaaaaatttcatatcttccaca |
8653405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 77 - 236
Target Start/End: Original strand, 3146392 - 3146551
Alignment:
| Q |
77 |
ccttcttctttaatgtattcttcatattgtaaacacaagaatctaatgcactcattaccttggccttccataagaattgcatatcttccacatggtattt |
176 |
Q |
| |
|
||||||||||||| | ||| ||||| |||||||||||| ||||||||||| ||||||| |||||||||| || |||| ||| || ||| |||| || |
|
|
| T |
3146392 |
ccttcttctttaaagcatttttcatcttgtaaacacaataatctaatgcattcattacattggccttccttagaaatttttcatcctcaacacggtaatt |
3146491 |
T |
|
| Q |
177 |
ctcagcttctttaatcattttttcaatttctaacgttgacaacctttctttgccattagt |
236 |
Q |
| |
|
||||||||||| ||||||||| ||||||| | |||||| ||||||||| ||||||| |
|
|
| T |
3146492 |
ttcagcttctttgatcatttttataatttcttgggatgacaatctttctttgtcattagt |
3146551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 180; Significance: 4e-97; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 18 - 387
Target Start/End: Complemental strand, 9336992 - 9336631
Alignment:
| Q |
18 |
acagtaattgcattgttgatcttctcactttcttgatgggaagagcatcaaattaacaaccttcttctttaatgtattcttcatattgtaaacacaagaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| | | ||| |||| ||||||| ||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
9336992 |
acagtaattgcattgttgatcttctcaatttcttgaggcgt-gagaatcagattaacattgttcttctttaaagcgttcttcatattgtaaacacaagaa |
9336894 |
T |
|
| Q |
118 |
tctaatgcactcattaccttggccttccataagaattgcatatcttccacatggtatttctcagcttctttaatcattttttcaatttctaacgttgaca |
217 |
Q |
| |
|
|||||||||| ||||||||||||| | | ||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||| || ||| |||||| |
|
|
| T |
9336893 |
tctaatgcacacattaccttggcccttcttaaaaattgcatatcttccacatgatatttcgcagcttctttaatcattttttcaatgtcgaacattgaca |
9336794 |
T |
|
| Q |
218 |
acctttctttgccattagtaatggcgatcgcattcatattgtcagtagatatttccttagctgtaacagttaggatgccattttcatcaacggaaattgg |
317 |
Q |
| |
|
||||||||||| |||||||||||| ||| || ||||||||| | |||||||||||| |||| |||||||||||||||||||||||||||| | | |
|
|
| T |
9336793 |
acctttctttgtcattagtaatggtgattgcgttcatattgcctgtagatatttccctagcagtaacagttaggatgccattttcatcaa-------tcg |
9336701 |
T |
|
| Q |
318 |
aaaagcatacctccaagggctggccacggggacatggaagacaaggaatcccaaatgaaccaagcagatt |
387 |
Q |
| |
|
||||||| |||||||||| |||||||||||| |||||||||| ||| || |||||||||||||||||| |
|
|
| T |
9336700 |
aaaagcaggcctccaagggatggccacggggagctggaagacaatgaagccgaaatgaaccaagcagatt |
9336631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 94; Significance: 9e-46; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 18 - 305
Target Start/End: Complemental strand, 16658618 - 16658335
Alignment:
| Q |
18 |
acagtaattgcattgttgatcttctcactttcttgatgggaagagcatcaaattaacaaccttcttctttaatgtattcttcatattgtaaacacaagaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| ||| |||| | ||||| ||| | ||||| ||| | |||||||||||||||||||||| || |
|
|
| T |
16658618 |
acagtaattgcattgttgatcttctcaatttcttgagagga-gagctttaaattcacatctttctt---taaagcattcttcatattgtaaacacaataa |
16658523 |
T |
|
| Q |
118 |
tctaatgcactcattaccttggccttccataagaattgcatatcttccacatggtatttctcagcttctttaatcattttttcaatttctaacgttgaca |
217 |
Q |
| |
|
|| |||||| |||||||||||||||| ||| |||| | |||||||||| |||||| |||||||||||| ||||||||||| |||||| || ||||||| |
|
|
| T |
16658522 |
tccaatgcattcattaccttggccttttgtaaaaatttcttatcttccacgtggtatctctcagcttcttcaatcatttttttaatttccaaggttgaca |
16658423 |
T |
|
| Q |
218 |
acctttctttgccattagtaatggcgatcgcattcatattgtcagtagatatttccttagctgtaacagttaggatgccattttcatc |
305 |
Q |
| |
|
| |||||||| |||| || |||| |||| || |||| | ||||||| ||||||||| | |||||||||||| ||||||||||| |
|
|
| T |
16658422 |
atctttctttttcattggttatggtgatcttgtttgtatttcctgtagatacttccttagcagaaacagttaggataccattttcatc |
16658335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 117 - 305
Target Start/End: Complemental strand, 16662998 - 16662810
Alignment:
| Q |
117 |
atctaatgcactcattaccttggccttccataagaattgcatatcttccacatggtatttctcagcttctttaatcattttttcaatttctaacgttgac |
216 |
Q |
| |
|
|||||||||| |||||||||||||||||| || ||||| | |||||| ||||||| | || |||||||| ||||| |||||||||||| | | || |
|
|
| T |
16662998 |
atctaatgcattcattaccttggccttccttaggaatttctcatcttcagcatggtactccttagcttcttgaatcaatttttcaatttcgactctggat |
16662899 |
T |
|
| Q |
217 |
aacctttctttgccattagtaatggcgatcgcattcatattgtcagtagatatttccttagctgtaacagttaggatgccattttcatc |
305 |
Q |
| |
|
|||||||||||| |||| || || | |||| ||||| || | | || ||| |||||| |||| |||||||| |||||| |||||||| |
|
|
| T |
16662898 |
aacctttctttgtcattggttatcgtgatctcattcttacttccggtggatctttcctctgctgaaacagttaagatgccgttttcatc |
16662810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 93 - 207
Target Start/End: Original strand, 28910518 - 28910632
Alignment:
| Q |
93 |
attcttcatattgtaaacacaagaatctaatgcactcattaccttggccttccataagaattgcatatcttccacatggtatttctcagcttctttaatc |
192 |
Q |
| |
|
||||||||| |||||||||||| ||| ||||||| ||||||| |||||||| | || |||| |||||| |||||||| |||||||||||||| ||| |
|
|
| T |
28910518 |
attcttcatcttgtaaacacaataatgtaatgcattcattacattggcctttcttagaaatttttcatcttctacatggtaattctcagcttctttgatc |
28910617 |
T |
|
| Q |
193 |
attttttcaatttct |
207 |
Q |
| |
|
|||| || ||||||| |
|
|
| T |
28910618 |
atttcttgaatttct |
28910632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 228
Target Start/End: Complemental strand, 53416997 - 53416947
Alignment:
| Q |
178 |
tcagcttctttaatcattttttcaatttctaacgttgacaacctttctttg |
228 |
Q |
| |
|
|||||||||| ||||||||||||||| || | |||||||||||||||||| |
|
|
| T |
53416997 |
tcagcttcttcaatcattttttcaatatcaattgttgacaacctttctttg |
53416947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 304
Target Start/End: Complemental strand, 53416913 - 53416872
Alignment:
| Q |
263 |
tagatatttccttagctgtaacagttaggatgccattttcat |
304 |
Q |
| |
|
|||||||||||||||| | |||||||||||| |||||||||| |
|
|
| T |
53416913 |
tagatatttccttagcagaaacagttaggataccattttcat |
53416872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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