View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13257_low_4 (Length: 369)
Name: NF13257_low_4
Description: NF13257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13257_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 52 - 359
Target Start/End: Original strand, 36463845 - 36464134
Alignment:
| Q |
52 |
atttcgaagaggtaattaagagtgaggctttgagaagaaggcgatgcgttgacatatttctttttgacaaatttatttccccttcttttgggcaaagttt |
151 |
Q |
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| T |
36463845 |
atttcgaagaggtaa---agagtgaggctttgataagatggcgatgctttgacatatttctttttgacaaatttatttccccttcttttgggtaaagttt |
36463941 |
T |
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| Q |
152 |
cctctttcacttcaatttgttcctttctcatctattttgatatagaagaatggttggattttttcttcatgttctcttatccttattttctctgttctga |
251 |
Q |
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| T |
36463942 |
cctctttcacttcaatttgtt---------------ttgatatagaagaatggttggattttttcttcatgttctcttatccttattttctctgttcaga |
36464026 |
T |
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| Q |
252 |
tttatttttattgaaatagatcacaccaactatgaatatatactcatgaagtgctatcgtggaaagtaagttaattttaattttttaaacaatttatttg |
351 |
Q |
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| T |
36464027 |
tttatttttattgaaatagatcacaccaactatgaatatatactcatgaagtgctattgtgaaaagtaagttaattttaattttttaaacaatttatttg |
36464126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 36463522 - 36463554
Alignment:
| Q |
1 |
ccaatagaggtttgaaagcatgtggtaattcca |
33 |
Q |
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| T |
36463522 |
ccaatagaggtttgaaagcatgtggtcattcca |
36463554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 201
Target Start/End: Original strand, 29199237 - 29199293
Alignment:
| Q |
145 |
aaagtttcctctttcacttcaatttgttcctttctcatctattttgatatagaagaa |
201 |
Q |
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| T |
29199237 |
aaagtttcttcttccacttttatttgtttctttctcatctattttgctatagaagaa |
29199293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 134 - 201
Target Start/End: Original strand, 19768880 - 19768947
Alignment:
| Q |
134 |
ttcttttgggcaaagtttcctctttcacttcaatttgttcctttctcatctattttgatatagaagaa |
201 |
Q |
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| T |
19768880 |
ttcttatgggtaaattttcttcttccacttttatttgtttctttctcatctattttgctatagaagaa |
19768947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 284
Target Start/End: Original strand, 4351267 - 4351329
Alignment:
| Q |
222 |
gttctcttatccttattttctctgttctgatttatttttattgaaatagatcacaccaactat |
284 |
Q |
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| T |
4351267 |
gttctcttattcatattttttctcttcagatttatctttattgaaattgttcacaccaactat |
4351329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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