View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13257_low_5 (Length: 344)
Name: NF13257_low_5
Description: NF13257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13257_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 151; Significance: 7e-80; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 17 - 198
Target Start/End: Original strand, 32016589 - 32016771
Alignment:
| Q |
17 |
tggaagtggtgttggttttatagaagtaaacacagagtgtgtgaatacttggcaccttcaaatcaagattggagtttcacacccttcgtcgtgcaatctc |
116 |
Q |
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| T |
32016589 |
tggaagtggtgttggttttatagaagtaaacaccgagcgtgtgaatacttggcgccttcaaatcaagattggagttccacacccttcgtcgtgcaacctc |
32016688 |
T |
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| Q |
117 |
ctgatctaaaggttgcaccatcgttgaatctttcacatttatgatcatctttgtttttt-gtctggttccacactatcaagta |
198 |
Q |
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| T |
32016689 |
ctgatctaaaggttgcaccatcgttgaatctctcacatttatgatcatctttgttttttggtctggttccacactatcaagta |
32016771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 194 - 326
Target Start/End: Original strand, 32016914 - 32017044
Alignment:
| Q |
194 |
aagtataacaaaataattaaccaatcttactaatgaatgtctattatcaaagatgttataatatctctctcaatgctccatnnnnnnntattcttaattt |
293 |
Q |
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| T |
32016914 |
aagtataacaaaataattaacaaatcttactaatgaacgtctattatcaaagatgttataatatctctctcaatgctccataaaaaaatattc----ttt |
32017009 |
T |
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| Q |
294 |
cgcaagg--ttaaatatggcaaattcttatttacc |
326 |
Q |
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| T |
32017010 |
cgcaaggtattaaatatggcaaattcttatttacc |
32017044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 5 - 174
Target Start/End: Original strand, 31967258 - 31967424
Alignment:
| Q |
5 |
tgtcgaagaatatggaagtggtgttggttttatagaagtaaacacagagtgtgtgaatacttggcaccttcaaatcaagattggagtttcacacccttcg |
104 |
Q |
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| T |
31967258 |
tgtcgaagaatttggaagtggtgttggttctatagaagtaaatactgggcgtgtgaatatttggcgtcttcaaatcaacattggagttccacaccctccg |
31967357 |
T |
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| Q |
105 |
tcgtgcaatctcctgatctaaaggttgcaccatcgttgaatctttcacatttatgatcatctttgttttt |
174 |
Q |
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| T |
31967358 |
tcgtgcaacctcc---tttgatggttgcaccatcttcgaatctctcacatttatgatcatcgtagttttt |
31967424 |
T |
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