View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13257_low_6 (Length: 330)
Name: NF13257_low_6
Description: NF13257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13257_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 1242373 - 1242641
Alignment:
| Q |
1 |
ggaataaaatcatagaatagggttgactatcgtgcatgattacagcctttttagtttacactccgaaactgagtcactttacttgctgatgcaatatttg |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1242373 |
ggaataaaatcatagaatagggttgactgtcgtgcatgattacagcctttttagtttacactccgaaactgagtcactttacttgctgatgcaatatttg |
1242472 |
T |
|
| Q |
101 |
tcttccaaaccaaacaatcttttcagattttcatcttctctttccttctcttcaagtaatatcgtgattcttcgccgtgattttattccacaatttaatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1242473 |
tcttccaaaccaaacaatcttttcagattttcatcttctctttccttctcttcaagtaatatcgtgattcttcgccgtgattttattccacaatttaatg |
1242572 |
T |
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| Q |
201 |
ccattaattctctaatctcctcaaaattttcatcattcatctttaccacttccaagcccttaaaggtcc |
269 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1242573 |
ccattaattctctaatctcctcaaaattttcatcattcatctttaccacttccaagcccttaaaggtcc |
1242641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 5 - 269
Target Start/End: Original strand, 42007028 - 42007292
Alignment:
| Q |
5 |
taaaatcatagaatagggttgactatcgtgcatgattacagcctttttagtttacactccgaaactgagtcactttacttgctgatgcaatatttgtctt |
104 |
Q |
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||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42007028 |
taaaatcatagaataggtttgactgtcgtgcatgattacagcctttttagtttacactccgaaactgagtcactttacttgctgatgcaatatttgtctt |
42007127 |
T |
|
| Q |
105 |
ccaaaccaaacaatcttttcagattttcatcttctctttccttctcttcaagtaatatcgtgattcttcgccgtgattttattccacaatttaatgccat |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42007128 |
ccaaaccaaacaatcttttcagattttcatcttctctttccttctcttcaagtaatatcgtgattcttcgccgtgattttattccacaatttaatgccat |
42007227 |
T |
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| Q |
205 |
taattctctaatctcctcaaaattttcatcattcatctttaccacttccaagcccttaaaggtcc |
269 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
42007228 |
taattctctaatctcctcaaaattttcatcattcatctttaccacttccaagcccttgaaggtcc |
42007292 |
T |
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