View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13257_low_7 (Length: 238)

Name: NF13257_low_7
Description: NF13257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13257_low_7
NF13257_low_7
[»] chr1 (1 HSPs)
chr1 (16-238)||(36463318-36463540)
[»] chr7 (1 HSPs)
chr7 (152-200)||(35102345-35102393)
[»] chr4 (5 HSPs)
chr4 (132-175)||(40884583-40884626)
chr4 (132-175)||(40911276-40911319)
chr4 (16-50)||(40884645-40884679)
chr4 (16-50)||(40910706-40910740)
chr4 (16-50)||(40911223-40911257)


Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 16 - 238
Target Start/End: Original strand, 36463318 - 36463540
Alignment:
Q  16 cattatgcaagcctcatgcttcatattatattgccttaagattcatattacaacaattcctccttgccataacaaaacaatcttaatcatcatcatcatc 115  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  36463318 cattatgcaagcctcaagcttcatattatattgccttaagattcatatgacaacaattcttccttgccacaacaaaacaatcttaatcatcatcatcatc 36463417  T
Q  116 tctcgcagatatcacgatgctctatatttgtcttcctaatttaaaacaaccatctgcctacttgctcatgattttgttgttttcaccggggtgccgaacg 215  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  36463418 tctcgcagatatcacaatgctctatatttgtcttcctaatttaaaacaatcatctgcctacttgctcatgattttgttgttttcaccagggtgccgaacg 36463517  T
Q  216 cttgccaatagaggtttgaaagc 238  Q
    |||||||||||||||||||||||    
T  36463518 cttgccaatagaggtttgaaagc 36463540  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 152 - 200
Target Start/End: Original strand, 35102345 - 35102393
Alignment:
Q  152 taatttaaaacaaccatctgcctacttgctcatgattttgttgttttca 200  Q
    ||||||||||  ||||||||||| |||||||||||||||||||||||||    
T  35102345 taatttaaaaagaccatctgcctgcttgctcatgattttgttgttttca 35102393  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 175
Target Start/End: Original strand, 40884583 - 40884626
Alignment:
Q  132 atgctctatatttgtcttcctaatttaaaacaaccatctgccta 175  Q
    ||||| |||||||||||||||||||||||||  |||||||||||    
T  40884583 atgctatatatttgtcttcctaatttaaaacgtccatctgccta 40884626  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 175
Target Start/End: Complemental strand, 40911319 - 40911276
Alignment:
Q  132 atgctctatatttgtcttcctaatttaaaacaaccatctgccta 175  Q
    ||||| |||||||||||||||||||||||||  |||||||||||    
T  40911319 atgctatatatttgtcttcctaatttaaaacttccatctgccta 40911276  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 50
Target Start/End: Original strand, 40884645 - 40884679
Alignment:
Q  16 cattatgcaagcctcatgcttcatattatattgcc 50  Q
    |||||||||||||||||||||||||||| ||||||    
T  40884645 cattatgcaagcctcatgcttcatattacattgcc 40884679  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 50
Target Start/End: Original strand, 40910706 - 40910740
Alignment:
Q  16 cattatgcaagcctcatgcttcatattatattgcc 50  Q
    |||||||||||||||||||||||||||| ||||||    
T  40910706 cattatgcaagcctcatgcttcatattacattgcc 40910740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 50
Target Start/End: Complemental strand, 40911257 - 40911223
Alignment:
Q  16 cattatgcaagcctcatgcttcatattatattgcc 50  Q
    |||||||||||||||||||||||||||| ||||||    
T  40911257 cattatgcaagcctcatgcttcatattacattgcc 40911223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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