View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13258_high_1 (Length: 654)

Name: NF13258_high_1
Description: NF13258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13258_high_1
NF13258_high_1
[»] chr3 (5 HSPs)
chr3 (390-641)||(51309663-51309913)
chr3 (174-293)||(51306211-51306330)
chr3 (289-383)||(51308963-51309057)
chr3 (393-435)||(3433053-3433095)
chr3 (391-432)||(31153319-31153360)
[»] chr2 (3 HSPs)
chr2 (241-354)||(31782753-31782879)
chr2 (393-436)||(5552276-5552319)
chr2 (391-435)||(44277839-44277883)
[»] chr1 (3 HSPs)
chr1 (302-369)||(19513249-19513316)
chr1 (209-256)||(19514255-19514302)
chr1 (391-435)||(35617087-35617131)
[»] scaffold0578 (2 HSPs)
scaffold0578 (303-369)||(9623-9689)
scaffold0578 (209-256)||(8637-8684)
[»] chr4 (3 HSPs)
chr4 (391-432)||(6076608-6076649)
chr4 (391-435)||(30599904-30599948)
chr4 (391-428)||(37977510-37977547)
[»] chr5 (1 HSPs)
chr5 (393-434)||(15072057-15072098)


Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-125; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 390 - 641
Target Start/End: Original strand, 51309663 - 51309913
Alignment:
Q  390 tgtttaagaccttcaatttgagggtctcaatcgtggatgctcttagtgtggctcttgtatgatgtatccatcacttaaaagccctaatttggcgttgtag 489  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||    
T  51309663 tgtttaagaccttcaatttgagggtctcaattgtggatgctcttagtgtggctcgtgtaggatgtatccatcacttaaaa-ccctaatttggcgttgtag 51309761  T
Q  490 agcttgaataactctatcaaacaaattgcaccaaaagaaaaacaaattggcagcaaaatcagagataattttgtgaccagagctagaaattgaaaacaag 589  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  51309762 agcttgaataactctatcaaacaaattgcaccaaaagaaaaacaaattggcagcaaaatcagagataattttgtgaccagagctagacattgaaaacaag 51309861  T
Q  590 tttacataaacatacttgctatatacaaattaacataaacttatgaacaatc 641  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51309862 tttacataaacatacttgctatatacaaattaacataaacttatgaacaatc 51309913  T

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Target: chr3; HSP #2
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 174 - 293
Target Start/End: Original strand, 51306211 - 51306330
Alignment:
Q  174 atggtgattgttttatcgctggatttgggtgaggaaagaaaaacagattggagagttctagatacaagaagaaagtgtgggtgggttgaaaatcaatgga 273  Q
    |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51306211 atggtgattgttgtatcgctggatttgggtgaggaaagaaaaacagagtggagagttctagatacaagaagaaagtgtgggtgggttgaaaatcaatgga 51306310  T
Q  274 accatcaaaatgaaagtttt 293  Q
    |||||||||||||| |||||    
T  51306311 accatcaaaatgaatgtttt 51306330  T

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Target: chr3; HSP #3
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 289 - 383
Target Start/End: Original strand, 51308963 - 51309057
Alignment:
Q  289 gttttttaattattttattacaaaattgtgtcgattggttccattaattctaaatgaattttttattattatatttctgtacgtatgtatcattt 383  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  51308963 gttttttaattattttattacaaaattgtgtcgattggttccattaattcttaatgaattttttattattatatttctgtacgtatgtatcattt 51309057  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 393 - 435
Target Start/End: Original strand, 3433053 - 3433095
Alignment:
Q  393 ttaagaccttcaatttgagggtctcaatcgtggatgctcttag 435  Q
    |||||||||||||||||||| |||| || ||||||||||||||    
T  3433053 ttaagaccttcaatttgaggatctccattgtggatgctcttag 3433095  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 432
Target Start/End: Complemental strand, 31153360 - 31153319
Alignment:
Q  391 gtttaagaccttcaatttgagggtctcaatcgtggatgctct 432  Q
    ||||||||||||||| ||||||||||| || |||||||||||    
T  31153360 gtttaagaccttcaaattgagggtctccattgtggatgctct 31153319  T

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Target: chr2 (Bit Score: 50; Significance: 3e-19; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 241 - 354
Target Start/End: Complemental strand, 31782879 - 31782753
Alignment:
Q  241 gaagaaagtgtgggtgggttgaaaatcaatggaacca-----tcaaaatgaaagttttttaa--------ttattttattacaaaattgtgtcgattggt 327  Q
    ||||||||||||| ||||||||||||||| |||||||     ||| ||| || |||||||||        ||||||||||||||||||||||| ||||||    
T  31782879 gaagaaagtgtggatgggttgaaaatcaacggaaccattaattcacaattaatgttttttaattatttatttattttattacaaaattgtgtcaattggt 31782780  T
Q  328 tccattaattctaaatgaattttttat 354  Q
    |||||||||||| ||||||||||||||    
T  31782779 tccattaattcttaatgaattttttat 31782753  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 393 - 436
Target Start/End: Complemental strand, 5552319 - 5552276
Alignment:
Q  393 ttaagaccttcaatttgagggtctcaatcgtggatgctcttagt 436  Q
    |||||| |||||||||||||||||| || |||||||||||||||    
T  5552319 ttaagatcttcaatttgagggtctccattgtggatgctcttagt 5552276  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 391 - 435
Target Start/End: Original strand, 44277839 - 44277883
Alignment:
Q  391 gtttaagaccttcaatttgagggtctcaatcgtggatgctcttag 435  Q
    ||||||||||||||| |||||| |||| || ||||||||||||||    
T  44277839 gtttaagaccttcaaattgaggatctccattgtggatgctcttag 44277883  T

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Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 302 - 369
Target Start/End: Complemental strand, 19513316 - 19513249
Alignment:
Q  302 tttattacaaaattgtgtcgattggttccattaattctaaatgaattttttattattatatttctgta 369  Q
    ||||||| ||||||||||| |||| ||||||||||||| ||||||||||||| |||||||||| ||||    
T  19513316 tttattataaaattgtgtcaattgattccattaattcttaatgaattttttactattatatttttgta 19513249  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 209 - 256
Target Start/End: Complemental strand, 19514302 - 19514255
Alignment:
Q  209 aagaaaaacagattggagagttctagatacaagaagaaagtgtgggtg 256  Q
    |||||||||||| ||||||||| |||||||||| ||||||||||||||    
T  19514302 aagaaaaacagagtggagagttatagatacaagtagaaagtgtgggtg 19514255  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 391 - 435
Target Start/End: Original strand, 35617087 - 35617131
Alignment:
Q  391 gtttaagaccttcaatttgagggtctcaatcgtggatgctcttag 435  Q
    ||||||||||||||| ||||| ||||| || ||||||||||||||    
T  35617087 gtttaagaccttcaacttgagcgtctccattgtggatgctcttag 35617131  T

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Target: scaffold0578 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: scaffold0578
Description:

Target: scaffold0578; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 303 - 369
Target Start/End: Original strand, 9623 - 9689
Alignment:
Q  303 ttattacaaaattgtgtcgattggttccattaattctaaatgaattttttattattatatttctgta 369  Q
    |||||| ||||||||||| |||| ||||||||||||| ||||||||||||| |||||||||| ||||    
T  9623 ttattataaaattgtgtcaattgattccattaattcttaatgaattttttactattatatttttgta 9689  T

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Target: scaffold0578; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 209 - 256
Target Start/End: Original strand, 8637 - 8684
Alignment:
Q  209 aagaaaaacagattggagagttctagatacaagaagaaagtgtgggtg 256  Q
    |||||||||||| ||||||||| |||||||||| ||||||||||||||    
T  8637 aagaaaaacagagtggagagttatagatacaagtagaaagtgtgggtg 8684  T

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Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 391 - 432
Target Start/End: Complemental strand, 6076649 - 6076608
Alignment:
Q  391 gtttaagaccttcaatttgagggtctcaatcgtggatgctct 432  Q
    ||||||||||||||||||||||||||| || |||||||||||    
T  6076649 gtttaagaccttcaatttgagggtctccattgtggatgctct 6076608  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 391 - 435
Target Start/End: Original strand, 30599904 - 30599948
Alignment:
Q  391 gtttaagaccttcaatttgagggtctcaatcgtggatgctcttag 435  Q
    ||||||||||||||| ||||||||||| || ||||||||||||||    
T  30599904 gtttaagaccttcaaattgagggtctccattgtggatgctcttag 30599948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 428
Target Start/End: Complemental strand, 37977547 - 37977510
Alignment:
Q  391 gtttaagaccttcaatttgagggtctcaatcgtggatg 428  Q
    ||||||||||||||||||||||||||| || |||||||    
T  37977547 gtttaagaccttcaatttgagggtctccattgtggatg 37977510  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 434
Target Start/End: Complemental strand, 15072098 - 15072057
Alignment:
Q  393 ttaagaccttcaatttgagggtctcaatcgtggatgctctta 434  Q
    |||||||||| |||||||||||||| || |||||||||||||    
T  15072098 ttaagacctttaatttgagggtctccattgtggatgctctta 15072057  T

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