View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13258_high_2 (Length: 378)
Name: NF13258_high_2
Description: NF13258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13258_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 17 - 368
Target Start/End: Complemental strand, 8448152 - 8447799
Alignment:
| Q |
17 |
attatcgtaagttcttttttggatacgattatttaactgaaacttataaggtgatagcgtttcgtgtgaagttgtataagaacatgggtgatgcaacagg |
116 |
Q |
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||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || | ||| ||||| |||| ||| ||||||||| |
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| T |
8448152 |
attatagtaagttcttttttggttacgattatttaactgaaacttataaggtgatagcgtttcgtatggaattggataaggacatcggtactgcaacagg |
8448053 |
T |
|
| Q |
117 |
tatggtgaaagttttaagcattgggaatagttcttggagaaatattcaatgcttactgcttccactttattggtttcaatcttataacaatag--tgcct |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||| ||| ||| ||||| | | | |
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| T |
8448052 |
tatggtgaaagttttaagcattgggaatagttcttggagagatattcaatgtttactgcttccactatattggtttcaaccttgtaataatagtatacat |
8447953 |
T |
|
| Q |
215 |
gtgtgaatttgaatggtactattaactggttggcccttcgcaattactatgacatatatttgaatggtataactgttgatgaatatgtgattgtttcgct |
314 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||| || ||| |||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
8447952 |
gtgtgaatttgaatggtactattaactggttggcctttcgcaattactttgtcatttatttgaatggtataactgttgatgaatatatgattgtttcgct |
8447853 |
T |
|
| Q |
315 |
tgatctctccaccgagttagacactcagctgttgttgcctcaaggttttgatga |
368 |
Q |
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|| | |||||||||||| | |||||||||||||||||||||| ||||||||||| |
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| T |
8447852 |
tgctatctccaccgagtcacacactcagctgttgttgcctcagggttttgatga |
8447799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 24 - 366
Target Start/End: Complemental strand, 8443937 - 8443601
Alignment:
| Q |
24 |
taagttcttttttggatacgattatttaactgaaacttataaggtgatagcgtttcgtgtgaagttgtataagaacatgggtgatgcaacaggtatggtg |
123 |
Q |
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| T |
8443937 |
taagttcttttttggttacgattatttgactgaaacttataaggtgatagcgtttcgtgtgaagttggatatgggcaacggtaatgcaa------tggtg |
8443844 |
T |
|
| Q |
124 |
aaagttttaagcattgggaatagttcttggagaaatattcaatgcttactgcttccactttattggtttcaatcttataacaatagtgcctgtgtgaatt |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||| || |||| ||| || || ||||| ||| |
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| T |
8443843 |
aaagttttaagcattgggaatagttcttggagaaatattcaatgtttaatgcttccactttattggtatcaacctaataataattgtacccgtgtgcatt |
8443744 |
T |
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| Q |
224 |
tgaatggtactattaactggttggcccttcgcaattactatgacatatatttgaatggtataactgttgatgaatatgtgattgtttcgcttgatctctc |
323 |
Q |
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|||||||||||||||| ||||||||| | || ||||||| ||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
8443743 |
tgaatggtactattaattggttggccgtgcgaaattactttgacaaatatttgaatggtataactgttgtcgaatatgtgatagtttcgcttgatctctc |
8443644 |
T |
|
| Q |
324 |
caccgagttagacactcagctgttgttgcctcaaggttttgat |
366 |
Q |
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|||||||| | ||||||||||| |||||||||| ||| ||||| |
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| T |
8443643 |
caccgagtcacacactcagctgctgttgcctcagggtgttgat |
8443601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 28 - 253
Target Start/End: Complemental strand, 8437625 - 8437400
Alignment:
| Q |
28 |
ttcttttttggatacgattatttaactgaaacttataaggtgatagcgtttcgtgtgaagttgtataagaacatgggtgatgcaacaggtatggtgaaag |
127 |
Q |
| |
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|||||||| || ||| ||||||| |||||||||||||||||| ||||||||||||||| |||| ||| | ||| ||| |||||| ||||| || ||||| |
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| T |
8437625 |
ttctttttaggttactattatttgactgaaacttataaggtggtagcgtttcgtgtgatgttggatatggacaacggtaatgcaagaggtacggggaaag |
8437526 |
T |
|
| Q |
128 |
ttttaagcattgggaatagttcttggagaaatattcaatgcttactgcttccactttattggtttcaatcttataacaatagtgcctgtgtgaatttgaa |
227 |
Q |
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||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||| | ||||||||||| || ||| |||| ||||||| |
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| T |
8437525 |
ttttaagcattgggaatagttcttggagagatattcaatgtttacagcttccactttattggtttggaccttataacaatggttcctatgtgtatttgaa |
8437426 |
T |
|
| Q |
228 |
tggtactattaactggttggcccttc |
253 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
8437425 |
tggtactattaactggttggcccttc |
8437400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 281 - 331
Target Start/End: Complemental strand, 8437357 - 8437307
Alignment:
| Q |
281 |
gtataactgttgatgaatatgtgattgtttcgcttgatctctccaccgagt |
331 |
Q |
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||||||||||||||||| ||| |||||||||||||||||||||||||||| |
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| T |
8437357 |
gtataactgttgatgaaattgtcattgtttcgcttgatctctccaccgagt |
8437307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 120 - 170
Target Start/End: Original strand, 6387911 - 6387961
Alignment:
| Q |
120 |
ggtgaaagttttaagcattgggaatagttcttggagaaatattcaatgctt |
170 |
Q |
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||||||| |||| ||||| ||||||| |||||||||||||||||||||||| |
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| T |
6387911 |
ggtgaaaattttcagcatggggaataattcttggagaaatattcaatgctt |
6387961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 262
Target Start/End: Original strand, 10460379 - 10460426
Alignment:
| Q |
215 |
gtgtgaatttgaatggtactattaactggttggcccttcgcaattact |
262 |
Q |
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||||| |||||||||||||||||| |||||||||||||| | |||||| |
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| T |
10460379 |
gtgtgtatttgaatggtactattagctggttggcccttcacgattact |
10460426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 262
Target Start/End: Complemental strand, 10553859 - 10553812
Alignment:
| Q |
215 |
gtgtgaatttgaatggtactattaactggttggcccttcgcaattact |
262 |
Q |
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||||| ||||||||||||| |||||||||||| |||||||| |||||| |
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| T |
10553859 |
gtgtgtatttgaatggtacaattaactggttgacccttcgcgattact |
10553812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 368
Target Start/End: Original strand, 10460468 - 10460550
Alignment:
| Q |
286 |
actgttgatgaatatgtgattgtttcgcttgatctctccaccgagttagacactcagctgttgttgcctcaaggttttgatga |
368 |
Q |
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|||||||| |||||||||||||||| | ||||||||| | ||| | ||||||||||||||||||||| ||||| ||||| |
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| T |
10460468 |
actgttgagaaatatgtgattgtttcattggatctctcctctgagacatacactcagctgttgttgcctcggggtttcgatga |
10460550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 286 - 365
Target Start/End: Complemental strand, 25915524 - 25915445
Alignment:
| Q |
286 |
actgttgatgaatatgtgattgtttcgcttgatctctccaccgagttagacactcagctgttgttgcctcaaggttttga |
365 |
Q |
| |
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|||||||| ||||||||||||||||||||||||| ||||| |||| | |||||||| ||||| |||||| |||||||| |
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| T |
25915524 |
actgttgagcaatatgtgattgtttcgcttgatctgtccactgagtcatacactcagttgttgctgcctcggggttttga |
25915445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 286 - 365
Target Start/End: Complemental strand, 25901506 - 25901427
Alignment:
| Q |
286 |
actgttgatgaatatgtgattgtttcgcttgatctctccaccgagttagacactcagctgttgttgcctcaaggttttga |
365 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| ||||| |||| | |||||||| ||||| | |||| |||||||| |
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| T |
25901506 |
actgttgagcaatatgtgattgtttcgcttgatctgtccactgagtcatacactcagttgttgctacctcggggttttga |
25901427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 223 - 262
Target Start/End: Complemental strand, 25915602 - 25915563
Alignment:
| Q |
223 |
ttgaatggtactattaactggttggcccttcgcaattact |
262 |
Q |
| |
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|||| ||||||||||||||||||||| ||||||||||||| |
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| T |
25915602 |
ttgagtggtactattaactggttggcacttcgcaattact |
25915563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 215 - 264
Target Start/End: Original strand, 25376861 - 25376910
Alignment:
| Q |
215 |
gtgtgaatttgaatggtactattaactggttggcccttcgcaattactat |
264 |
Q |
| |
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||||| |||||| ||||||||||| ||||||||||||||||||||||||| |
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| T |
25376861 |
gtgtgtatttgagtggtactattacctggttggcccttcgcaattactat |
25376910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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