View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13258_high_6 (Length: 299)
Name: NF13258_high_6
Description: NF13258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13258_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-163; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 46599149 - 46599442
Alignment:
| Q |
1 |
agagttccaatgattcttgacagcattatcagttctaccaggtaaaagccttgcaatggtagcccaacggttaccatattgagcatgcgccgctatgatt |
100 |
Q |
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| T |
46599149 |
agagttccaatgattcttgacagcattatcagttctaccaggtaaaagccttgcaatggtagcccaacggttaccatattgagcatgcgccgctatgatt |
46599248 |
T |
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| Q |
101 |
gtttcatcttcttgtgaagaaaatggacggtgttccacggtgggactcagctgattacaccaccggagacgacatgacttgccggaacgaccttttatgt |
200 |
Q |
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| T |
46599249 |
gtttcatcttcttgtgaagaaaatggacggtgttccacggtgggactcagctgattacaccaccggagacgacatgacttgccggaacgaccttttatgt |
46599348 |
T |
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| Q |
201 |
agcggctgatgagtgaccagtttcttgctccatgttgttcaaccagtcgtgttaaaattctgtcttcttctgcactccatggacctttgcttct |
294 |
Q |
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| T |
46599349 |
agcggctgatgagtgaccagtttcttgctccatgttgttcaaccagtcgtgttaaaattctgtcttcttctgcactccatggacctttgattct |
46599442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 54
Target Start/End: Original strand, 40752008 - 40752055
Alignment:
| Q |
7 |
ccaatgattcttgacagcattatcagttctaccaggtaaaagccttgc |
54 |
Q |
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| T |
40752008 |
ccaatgattcttcacagcattatcagttctaccagggaaaagtcttgc |
40752055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 137 - 192
Target Start/End: Complemental strand, 35748041 - 35747986
Alignment:
| Q |
137 |
acggtgggactcagctgattacaccaccggagacgacatgacttgccggaacgacc |
192 |
Q |
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| T |
35748041 |
acggttggactcagctgattacaccaccgtagacggcatgattttcctgaacgacc |
35747986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 31791021 - 31791067
Alignment:
| Q |
11 |
tgattcttgacagcattatcagttctaccaggtaaaagccttgcaat |
57 |
Q |
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| T |
31791021 |
tgattcttaacagcattatcagttcttccagggaaaagcctagcaat |
31791067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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