View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13258_low_12 (Length: 249)
Name: NF13258_low_12
Description: NF13258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13258_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-122; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 39732533 - 39732765
Alignment:
| Q |
1 |
tacctctccaagttttcagataattcaagtcttgatacttacttaattgctcttttcatttatttttatcaacattagtaggtcctcaacctgaaaatgc |
100 |
Q |
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| T |
39732533 |
tacctctccaagttttcagataattcaagtcttgatacttacttaattgctcttttcatttatttttatgaacattagtaggtcctcaacctgaaaatgc |
39732632 |
T |
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| Q |
101 |
caccattgtggatagccagcctggcaaggatccttctccatttaaattcacatggagaattgaaagattttcttggagaaatgagataaagctctgttca |
200 |
Q |
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| T |
39732633 |
caccattgtggatagccagcctggcaaggatccttctccatttaaattcacatggagaattgaaagattttcttggaggaacgagataaagctctgttca |
39732732 |
T |
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| Q |
201 |
gatgtatttgatgttgggggctataaatggtat |
233 |
Q |
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| T |
39732733 |
gatgtatttgatgttgggggctataaatggtat |
39732765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 42 - 234
Target Start/End: Complemental strand, 37477029 - 37476843
Alignment:
| Q |
42 |
cttaattgctcttttcatttatttttatcaacattagtaggtcctcaacctgaaaatgccaccattgtggatagccagcctggcaaggatccttctccat |
141 |
Q |
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| T |
37477029 |
cttaattgctcttttcatttatattcatgaacattagtggttgctcaacctgaaactgccaacactgtgg------agcctgtcgaggatccttcaccat |
37476936 |
T |
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| Q |
142 |
ttaaattcacatggagaattgaaagattttcttggagaaatgagataaagctctgttcagatgtatttgatgttgggggctataaatggtatt |
234 |
Q |
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| T |
37476935 |
caagattcacatggagaattgacaacttttctagggtgaatttgaaaaagctctattcagatgtatttgttgttgggagttacaaatggtatt |
37476843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 146 - 234
Target Start/End: Complemental strand, 39868313 - 39868225
Alignment:
| Q |
146 |
attcacatggagaattgaaagattttcttggagaaatgagataaagctctgttcagatgtatttgatgttgggggctataaatggtatt |
234 |
Q |
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| T |
39868313 |
attcacatggagaattgggggattttcttcgataaatacaataaagctctattcagatgtatttgaagttgggggttacaaatggtatt |
39868225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 146 - 234
Target Start/End: Complemental strand, 39901787 - 39901699
Alignment:
| Q |
146 |
attcacatggagaattgaaagattttcttggagaaatgagataaagctctgttcagatgtatttgatgttgggggctataaatggtatt |
234 |
Q |
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| T |
39901787 |
attcaaatggacaattgacagattttctcagaaaaatgcgagagagatctattcagatgtatttgaagttggtggctataaatggtatt |
39901699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 192 - 235
Target Start/End: Complemental strand, 39913702 - 39913659
Alignment:
| Q |
192 |
ctctgttcagatgtatttgatgttgggggctataaatggtattg |
235 |
Q |
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| T |
39913702 |
ctctattcagatgtatttgaagctgggggctataaatggtattg |
39913659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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