View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13258_low_4 (Length: 359)
Name: NF13258_low_4
Description: NF13258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13258_low_4 |
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| [»] scaffold0293 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 13 - 340
Target Start/End: Complemental strand, 37597024 - 37596695
Alignment:
| Q |
13 |
catcaatgaacggtggtggcttgtttcggaaagtaggaatttcaagtggatactttccttcattcatagtattcggtttgggaaatgccatagccatctt |
112 |
Q |
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| T |
37597024 |
catcaatgaacggtggtggcttgtttcggaaagtaggaatttcaagtggatactttccttcattcatagtattcggtttgggaaatgccaaagtcatctt |
37596925 |
T |
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| Q |
113 |
gtgaccttacatgcacaccattcacaccaatgcagccaattatcatctcacgtgcccatcaaattatatgtgagcagtaggggatcttgaannnnnnngt |
212 |
Q |
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| T |
37596924 |
gtgaccttacatgcacaccattcacaccaatgcagccaattatcatctcacgtggccataaaattataaatgagcagtagcggatcttgagttttttttt |
37596825 |
T |
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| Q |
213 |
tg--ttgttgttgagggtgccaaataattatggaatatatgttaaatagtttcaaaccggtctaatggttcatttacttgaattaacatgggggatgacg |
310 |
Q |
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| T |
37596824 |
tgttttgttgttgaaggtgccaaataattatggaatatatgttaaatagtttcaaaccgatctagtggttcatttgcttgaattaacatgggggatgacg |
37596725 |
T |
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| Q |
311 |
gttcaagtcatggcaggaacattggtacgt |
340 |
Q |
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| T |
37596724 |
gttcaagtcatgataggaacattgatacgt |
37596695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0293 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0293
Description:
Target: scaffold0293; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 225 - 266
Target Start/End: Complemental strand, 1104 - 1063
Alignment:
| Q |
225 |
gggtgccaaataattatggaatatatgttaaatagtttcaaa |
266 |
Q |
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| T |
1104 |
gggtgtcaaataattatggaatatatattaaatagtttcaaa |
1063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 266
Target Start/End: Original strand, 5232311 - 5232352
Alignment:
| Q |
225 |
gggtgccaaataattatggaatatatgttaaatagtttcaaa |
266 |
Q |
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| T |
5232311 |
gggtgccaaatatttatggaatatatattaaacagtttcaaa |
5232352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 266
Target Start/End: Complemental strand, 50432613 - 50432565
Alignment:
| Q |
218 |
ttgttgagggtgccaaataattatggaatatatgttaaatagtttcaaa |
266 |
Q |
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| T |
50432613 |
ttgttgggggtgccaaatatatatggaatatatattaaatggtttcaaa |
50432565 |
T |
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