View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13258_low_5 (Length: 353)

Name: NF13258_low_5
Description: NF13258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13258_low_5
NF13258_low_5
[»] chr3 (2 HSPs)
chr3 (18-294)||(39712274-39712553)
chr3 (63-274)||(11527907-11528119)
[»] chr2 (5 HSPs)
chr2 (63-291)||(28166191-28166425)
chr2 (63-291)||(44905035-44905270)
chr2 (115-291)||(37952800-37952976)
chr2 (137-281)||(37958560-37958704)
chr2 (137-281)||(37896498-37896642)
[»] chr1 (2 HSPs)
chr1 (63-291)||(40768142-40768376)
chr1 (62-291)||(13228561-13228796)
[»] chr7 (1 HSPs)
chr7 (63-291)||(38757172-38757406)
[»] chr4 (2 HSPs)
chr4 (63-274)||(11149307-11149524)
chr4 (63-291)||(34538655-34538888)
[»] chr5 (1 HSPs)
chr5 (134-291)||(6535351-6535513)


Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 18 - 294
Target Start/End: Complemental strand, 39712553 - 39712274
Alignment:
Q  18 cctagaggacttgaggatcttattttaagagattannnnnnnacaagaaaatcatggaagtttagactcattgctcaaagtcaaagcactggagaacatg 117  Q
    |||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39712553 cctagaggacttgaggatcttattttaagagattatttttttacaagaaaatcatggaagtttagactcattgctcaaagtcaaagcactggagaacatg 39712454  T
Q  118 aagattcttttaaggtaattattgcttttggaaaagaagaaattgaagggatgaaaaaatgggtgctgaatcaatggaagaaaaatga---taatgaaat 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||   |||||||||    
T  39712453 aagattcttttaaggtaattattgcttttggaaaagaagaaattgaggggatgaaaaaatgggtgctgaatcaatggaagaaaaatgataataatgaaat 39712354  T
Q  215 caacgtgccaaaatttctatctaaatttgttgtaacttctgcttttgtttgggctagtatggttaaagcaatgcataaaa 294  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  39712353 caacgtgccaaaatttatatctaaatttgttgtaacttctgcttttgtttgggctagtatggttgaagcaatgcataaaa 39712274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 63 - 274
Target Start/End: Complemental strand, 11528119 - 11527907
Alignment:
Q  63 agaaaatcatggaagtttagactcattgctcaaagtcaaagcactggagaacatgaagattcttttaaggtaattattgcttttggaaaagaagaaattg 162  Q
    |||||||||||||||  ||||||||||||| ||||||||||||  | ||||||| |||||| | |||||| |||||||| ||||||||||||||||||||    
T  11528119 agaaaatcatggaagcatagactcattgctgaaagtcaaagcaaggaagaacatcaagattttgttaaggcaattattgtttttggaaaagaagaaattg 11528020  T
Q  163 aagggatgaaaaaa-tgggtgctgaatcaatggaagaaaaatgataatgaaatcaacgtgccaaaatttctatctaaatttgttgtaacttctgcttttg 261  Q
    |  ||||||||||| |  ||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||| |||||| |    
T  11528019 agaggatgaaaaaaatatgtgctgaatcaatggaagaaaaatgataacgaaatcaacgcgccacaatttctatctaaatttgttgtaacttgtgctttcg 11527920  T
Q  262 tttgggctagtat 274  Q
    |||||||||||||    
T  11527919 tttgggctagtat 11527907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 108; Significance: 3e-54; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 63 - 291
Target Start/End: Complemental strand, 28166425 - 28166191
Alignment:
Q  63 agaaaatcatggaagtttagactcattgctcaaagtcaaagcactggagaacatgaagattcttttaaggtaattattgcttttggaaaagaagaaattg 162  Q
    |||||||||||||||  ||||||||||||| ||| ||||| |||   |||||||||||||| | |||| | |||||||| ||||||||||||||||||||    
T  28166425 agaaaatcatggaagcctagactcattgctgaaactcaaaccaccaaagaacatgaagattttattaaagcaattattgtttttggaaaagaagaaattg 28166326  T
Q  163 aagggatgaaaaaatgggtgctgaatcaatggaagaaaaat------gataatgaaatcaacgtgccaaaatttctatctaaatttgttgtaacttctgc 256  Q
    | |||||||||||||  || |||||||||||||||||||||      ||||| ||||||||||||||| |||||||| |||||||||| ||||||| |||    
T  28166325 aggggatgaaaaaatatgtactgaatcaatggaagaaaaatggcaacgataaagaaatcaacgtgccacaatttctaactaaatttgtcgtaacttgtgc 28166226  T
Q  257 ttttgtttgggctagtatggttaaagcaatgcata 291  Q
    ||| |||||| ||||||| ||||||||||| ||||    
T  28166225 tttcgtttggtctagtatagttaaagcaatacata 28166191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 63 - 291
Target Start/End: Complemental strand, 44905270 - 44905035
Alignment:
Q  63 agaaaatcatggaagtttagactcattgctcaaagtcaaagcactggagaacatgaagattcttttaaggtaattattgcttttggaaaagaagaaattg 162  Q
    |||||||||||||||  ||||||||||||| ||| ||||| |||   |||||||||| ||| | |||||| |||||||| ||||||||||||||||||||    
T  44905270 agaaaatcatggaagcctagactcattgctgaaactcaaatcaccaaagaacatgaacattttgttaaggcaattattgtttttggaaaagaagaaattg 44905171  T
Q  163 aagggatgaaaaaa-tgggtgctgaatcaatggaagaaaaat------gataatgaaatcaacgtgccaaaatttctatctaaatttgttgtaacttctg 255  Q
    | |||||||||||| |  ||  || |||||||||||||||||      ||||| |||||||||| |||| ||||||||||||||||||| ||||||| ||    
T  44905170 aggggatgaaaaaaatatgtaatggatcaatggaagaaaaatggcaacgataaggaaatcaacgcgccacaatttctatctaaatttgtcgtaacttgtg 44905071  T
Q  256 cttttgtttgggctagtatggttaaagcaatgcata 291  Q
    |||| |||||||||||||| ||||||||||| ||||    
T  44905070 ctttcgtttgggctagtatagttaaagcaatacata 44905035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 115 - 291
Target Start/End: Original strand, 37952800 - 37952976
Alignment:
Q  115 atgaagattcttttaaggtaattattgcttttggaaaagaagaaattgaagggatgaaaaaatgggtgctgaatcaatggaagaaaaatgataatgaaat 214  Q
    ||||||||| | |||||| |||||||| ||| |||||||||||||| || |||||||||||||||||  ||||| ||||||||||||| ||| | |||||    
T  37952800 atgaagattgtgttaaggcaattattgttttcggaaaagaagaaatcgaggggatgaaaaaatgggtattgaatgaatggaagaaaaaagatcaagaaat 37952899  T
Q  215 caacgtgccaaaatttctatctaaatttgttgtaacttctgcttttgtttgggctagtatggttaaagcaatgcata 291  Q
    | | |  ||| ||||||||||||||| ||||||||||| |||||||||||||| |||| ||||||||||||||||||    
T  37952900 ccaagcaccacaatttctatctaaatatgttgtaacttgtgcttttgtttgggttagtttggttaaagcaatgcata 37952976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 137 - 281
Target Start/End: Original strand, 37958560 - 37958704
Alignment:
Q  137 tattgcttttggaaaagaagaaattgaagggatgaaaaaatgggtgctgaatcaatggaagaaaaatgataatgaaatcaacgtgccaaaatttctatct 236  Q
    ||||| ||||| |||||||||||||||  | ||||||| |||||  ||  ||||||||||||||||||||  |||| |  | | |||| ||||| |||||    
T  37958560 tattgtttttgcaaaagaagaaattgagagaatgaaaatatgggcacttgatcaatggaagaaaaatgattgtgaagttcaagcgccacaatttttatct 37958659  T
Q  237 aaatttgttgtaacttctgcttttgtttgggctagtatggttaaa 281  Q
    |||||||||||||||| || |||  ||||||||||||||||||||    
T  37958660 aaatttgttgtaacttgtggtttcatttgggctagtatggttaaa 37958704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 137 - 281
Target Start/End: Complemental strand, 37896642 - 37896498
Alignment:
Q  137 tattgcttttggaaaagaagaaattgaagggatgaaaaaatgggtgctgaatcaatggaagaaaaatgataatgaaatcaacgtgccaaaatttctatct 236  Q
    ||||| ||||| |||||| ||||||||  | ||||||| |||||  || ||||||||||||||||||||| ||||| |  | | |||| ||||  |||||    
T  37896642 tattgtttttgcaaaagaggaaattgagagaatgaaaatatgggcacttaatcaatggaagaaaaatgatcatgaagttcaagcgccacaattgttatct 37896543  T
Q  237 aaatttgttgtaacttctgcttttgtttgggctagtatggttaaa 281  Q
    |||||||||||||||| || |||  ||||| ||||| ||||||||    
T  37896542 aaatttgttgtaacttgtggtttcatttggtctagtttggttaaa 37896498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 108; Significance: 3e-54; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 63 - 291
Target Start/End: Complemental strand, 40768376 - 40768142
Alignment:
Q  63 agaaaatcatggaagtttagactcattgctcaaagtcaaagcactggagaacatgaagattcttttaaggtaattattgcttttggaaaagaagaaattg 162  Q
    ||||||| |||||||  ||||||||||| | ||| ||||| |||   |||||||||||||| | |||||| |||||||| ||||||||||||||||||||    
T  40768376 agaaaattatggaagcctagactcattgttgaaactcaaatcaccaaagaacatgaagattttgttaaggcaattattgtttttggaaaagaagaaattg 40768277  T
Q  163 aagggatgaaaaaatgggtgctgaatcaatggaagaaaaat------gataatgaaatcaacgtgccaaaatttctatctaaatttgttgtaacttctgc 256  Q
    | |||||||||||||  || |||||||||||||||||||||      ||||| ||||||||||||||| ||||||||||||||||||| ||||||| ||     
T  40768276 aggggatgaaaaaatatgtactgaatcaatggaagaaaaatggcaacgataaggaaatcaacgtgccacaatttctatctaaatttgtcgtaacttgtga 40768177  T
Q  257 ttttgtttgggctagtatggttaaagcaatgcata 291  Q
    ||| |||||||||||||| ||||||||||| ||||    
T  40768176 tttcgtttgggctagtatagttaaagcaatacata 40768142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 62 - 291
Target Start/End: Original strand, 13228561 - 13228796
Alignment:
Q  62 aagaaaatcatggaagtttagactcattgctcaaagtcaaagcactggagaacatgaagattcttttaaggtaattattgcttttggaaaagaagaaatt 161  Q
    ||||||||||||||||  ||||||||||||| ||| ||||| |||   |||||||||||||| | |||||  |||||||| |||| ||||||||||||||    
T  13228561 aagaaaatcatggaagcctagactcattgctgaaactcaaatcaccaaagaacatgaagattttgttaagacaattattgtttttagaaaagaagaaatt 13228660  T
Q  162 gaagggatgaaaaaatgggtgctgaatcaatggaagaaaaat------gataatgaaatcaacgtgccaaaatttctatctaaatttgttgtaacttctg 255  Q
    || |||||||||||||  || |||||||||||||||||||||      ||||| |||||||||| |||| ||||||||||||||||||| ||||||| ||    
T  13228661 gaggggatgaaaaaatatgtactgaatcaatggaagaaaaatggcaacgataaggaaatcaacgcgccacaatttctatctaaatttgtcgtaacttgtg 13228760  T
Q  256 cttttgtttgggctagtatggttaaagcaatgcata 291  Q
    |||| ||||||||||||||  |||||||||| ||||    
T  13228761 ctttcgtttgggctagtatatttaaagcaatacata 13228796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 96; Significance: 5e-47; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 63 - 291
Target Start/End: Complemental strand, 38757406 - 38757172
Alignment:
Q  63 agaaaatcatggaagtttagactcattgctcaaagtcaaagcactggagaacatgaagattcttttaaggtaattattgcttttggaaaagaagaaattg 162  Q
    |||||||||||||||  ||||||||||||| ||| ||||| |||   |||||||||||||| | ||||   |||||||| ||||| ||||||||||||||    
T  38757406 agaaaatcatggaagcctagactcattgctgaaactcaaatcaccaaagaacatgaagattttgttaaaacaattattgtttttgaaaaagaagaaattg 38757307  T
Q  163 aagggatgaaaaaatgggtgctgaatcaatggaagaaaaat------gataatgaaatcaacgtgccaaaatttctatctaaatttgttgtaacttctgc 256  Q
    | |||||||||||||  |  |||||||||||||||||||||      ||||| |||||||||| || | ||||||||||||||||||| ||||||| |||    
T  38757306 aggggatgaaaaaatatgcactgaatcaatggaagaaaaatggcaacgataaggaaatcaacgcgcaacaatttctatctaaatttgtcgtaacttgtgc 38757207  T
Q  257 ttttgtttgggctagtatggttaaagcaatgcata 291  Q
    ||| |||||||||||||| ||||||||||| ||||    
T  38757206 tttcgtttgggctagtatagttaaagcaatacata 38757172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 63 - 274
Target Start/End: Original strand, 11149307 - 11149524
Alignment:
Q  63 agaaaatcatggaagtttagactcattgctcaaagtcaaagcactggagaacatgaagattcttttaaggtaattattgcttttggaaaagaagaaattg 162  Q
    |||||||||||||||  ||||||||||||| ||| | ||| |||   |||||||||||||| | |||||| |||||||| ||||||||||||||||||||    
T  11149307 agaaaatcatggaagaatagactcattgctgaaactgaaatcaccaaagaacatgaagattttgttaaggcaattattgtttttggaaaagaagaaattg 11149406  T
Q  163 aagggatgaaaaaatgggtgctgaatcaatggaagaaaaatg------ataatgaaatcaacgtgccaaaatttctatctaaatttgttgtaacttctgc 256  Q
    | |||||||||||||  |||||||||||||||||||||||||      |||| ||||||||||||||| ||||||||||| | ||||| ||||||| |||    
T  11149407 aggggatgaaaaaatatgtgctgaatcaatggaagaaaaatggcaacaataaggaaatcaacgtgccacaatttctatctcattttgtcgtaacttgtgc 11149506  T
Q  257 ttttgtttgggctagtat 274  Q
    ||| | ||||| ||||||    
T  11149507 tttcgcttgggttagtat 11149524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 63 - 291
Target Start/End: Complemental strand, 34538888 - 34538655
Alignment:
Q  63 agaaaatcatggaagtttagactcattgctcaaagtcaaagcactggagaacatgaagattcttttaaggtaattattgcttttggaaaagaagaaattg 162  Q
    |||||||||||||||  |||||||||| || ||| ||||| |||   |||||||||||||| | |||||| |||||||| ||||||||||||||||||||    
T  34538888 agaaaatcatggaagcctagactcattactgaaactcaaatcaccaaagaacatgaagattttgttaaggcaattattgtttttggaaaagaagaaattg 34538789  T
Q  163 aagggatgaaaaaatgggtgctgaatcaatggaagaaa-----aatgataatgaaatcaacgtgccaaaatttctatctaaatttgttgtaacttctgct 257  Q
    | |||||||||||||  || || |||||||| || |||     || ||||| |||||||||| |||| ||||||||| |||||||||  |||||| ||||    
T  34538788 aggggatgaaaaaatatgtacttaatcaatgaaaaaaaatggcaacgataaggaaatcaacgcgccacaatttctatgtaaatttgtcataacttatgct 34538689  T
Q  258 tttgtttgggctagtatggttaaagcaatgcata 291  Q
    || |||||||||||||| ||||||||||| ||||    
T  34538688 ttcgtttgggctagtatagttaaagcaatacata 34538655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 134 - 291
Target Start/End: Complemental strand, 6535513 - 6535351
Alignment:
Q  134 aattattgcttttggaaaagaagaaattgaagggatgaaaaaatgggtgctgaatcaatggaagaaaaatg------ataatgaaatcaacgtgccaaaa 227  Q
    |||||||| ||||||||||||||||||||  |||||||||||||  || || |||||||||||||||||||      ||||  ||||||||| |||| ||    
T  6535513 aattattgtttttggaaaagaagaaattgg-gggatgaaaaaatatgtacttaatcaatggaagaaaaatggcaacaataagaaaatcaacgcgccacaa 6535415  T
Q  228 tttctatctaaatttgttgtaacttctgcttttgtttgggctagtatggttaaagcaatgcata 291  Q
    ||||||||||||||||  |||| || |||||| ||||| |||||||| ||||||||||| ||||    
T  6535414 tttctatctaaatttgccgtaatttgtgctttcgtttgagctagtatagttaaagcaatacata 6535351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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