View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13258_low_8 (Length: 294)
Name: NF13258_low_8
Description: NF13258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13258_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 18 - 285
Target Start/End: Original strand, 49353542 - 49353809
Alignment:
| Q |
18 |
aaccaaatcccaaagttaaagctgaagttgctaagtcttgaatctttgccacaacttgtgagttttcctgaatggttgaaaggatgtgccgacacattaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49353542 |
aaccaaatcccaaagttaaagctgaagttgctaagtcttgaatctttgccacaacttgtgagttttcctgaatggttgaaaggatgtgccgacacattaa |
49353641 |
T |
|
| Q |
118 |
acaccttggtaattgatggctgtgaaaatcttgatgagcttcctgagtggttatcaactatgatttgtttcaatagatttgtagttataaattgcccaaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49353642 |
acaccttggtaattgatggctgtgaaaatcttgatgagcttcctgagtggttatcaactatgatttgtttcaatagatttgtagttataaattgcccaaa |
49353741 |
T |
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| Q |
218 |
attgctttcgctccccgattgcttttcaaaccttgaaagtttattaattgtggattgtccagaattat |
285 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
49353742 |
attgctttcgctccccgattgcttttcaaaccttgaaagtttattaattgtagattgtccagaattat |
49353809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 24 - 229
Target Start/End: Original strand, 19031032 - 19031237
Alignment:
| Q |
24 |
atcccaaagttaaagctgaagttgctaagtcttgaatctttgccacaacttgtgagttttcctgaatggttgaaaggatgtgccgacacattaaacacct |
123 |
Q |
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||||| |||||||| ||||||||||||| ||||| |||||||||| ||||||||||| ||||| |||||||| |||||| || |||||||||| |||||| |
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| T |
19031032 |
atcccgaagttaaaactgaagttgctaaatcttgtatctttgccaaaacttgtgagtattcctaaatggttgcaaggatctgtcgacacattacacacct |
19031131 |
T |
|
| Q |
124 |
tggtaattgatggctgtgaaaatcttgatgagcttcctgagtggttatcaactatgatttgtttcaatagatttgtagttataaattgcccaaaattgct |
223 |
Q |
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|| ||||| | |||||||||||||||||||||||||||||||||||||||| | |||||| |||||||| |||| || ||||||| || |||||||| |
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| T |
19031132 |
tgcaaattgtttactgtgaaaatcttgatgagcttcctgagtggttatcaactcttatttgtctcaatagacttgttattctaaattgtccgaaattgct |
19031231 |
T |
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| Q |
224 |
ttcgct |
229 |
Q |
| |
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|||||| |
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| T |
19031232 |
ttcgct |
19031237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 68 - 284
Target Start/End: Original strand, 49342162 - 49342387
Alignment:
| Q |
68 |
acaacttgtgagttttcctgaatggttgaaaggatgtgccgacacattaaacaccttggtaattgatggctgtgaaaatcttgatgagcttcctgagtgg |
167 |
Q |
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|||||||||||||||||| |||||||| |||||||||| ||||||||| | ||||||||||||||||||||||||||||| || ||||||||| ||||| |
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| T |
49342162 |
acaacttgtgagttttccgcaatggttgcaaggatgtgcagacacattacaaaccttggtaattgatggctgtgaaaatctagaggagcttcctcagtgg |
49342261 |
T |
|
| Q |
168 |
ttatcaactatgatttgtttcaatagatttgtagttataaattgcccaaaattgctttcgctccccg---------attgcttttcaaaccttgaaagtt |
258 |
Q |
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|| ||||| |||||||| |||| | | || | || ||||||||| |||||| |||||||||||| ||||| || ||||||||||||||| |
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| T |
49342262 |
ttctcaacgctgatttgtctcaaaatacttcgaattcgaaattgcccgaaattgttttcgctccccgaagatttacattgccttccaaaccttgaaagtt |
49342361 |
T |
|
| Q |
259 |
tattaattgtggattgtccagaatta |
284 |
Q |
| |
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|| ||||| ||||||||||||||| |
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| T |
49342362 |
taaaaattgaagattgtccagaatta |
49342387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 18 - 236
Target Start/End: Complemental strand, 32782727 - 32782509
Alignment:
| Q |
18 |
aaccaaatcccaaagttaaagctgaagttgctaagtcttgaatctttgccacaacttgtgagttttcctgaatggttgaaaggatgtgccgacacattaa |
117 |
Q |
| |
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||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||| ||||| |||||||| ||| |||||| || |||||| |
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| T |
32782727 |
aaccaaatcccaaagtttaagctgaagttgctaactcttcgatctttgccacaacttgtgagtattcctaaatggttgcaagaatgtgcggatacattac |
32782628 |
T |
|
| Q |
118 |
acaccttggtaattgatggctgtgaaaatcttgatgagcttcctgagtggttatcaactatgatttgtttcaatagatttgtagttataaattgcccaaa |
217 |
Q |
| |
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| ||||||| ||||| || |||||||||| ||||||||||||||||||||||||||||| |||||||| |||||| | ||||| || |||||||||| || |
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| T |
32782627 |
agaccttggcaattgttgactgtgaaaatattgatgagcttcctgagtggttatcaactctgatttgtctcaataaacttgtaattgtaaattgcccgaa |
32782528 |
T |
|
| Q |
218 |
attgctttcgctccccgat |
236 |
Q |
| |
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||||||||||||||||||| |
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| T |
32782527 |
attgctttcgctccccgat |
32782509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 55 - 185
Target Start/End: Original strand, 29751965 - 29752095
Alignment:
| Q |
55 |
ttgaatctttgccacaacttgtgagttttcctgaatggttgaaaggatgtgccgacacattaaacaccttggtaattgatggctgtgaaaatcttgatga |
154 |
Q |
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||||||||||||||||| | ||||||||||| |||||||| |||||||||| ||||||||| ||| ||| | |||| | ||||||||||||||| | |
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| T |
29751965 |
ttgaatctttgccacaattgttgagttttcctcaatggttgcaaggatgtgcggacacattacacagcttatttattggtcactgtgaaaatcttgagaa |
29752064 |
T |
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| Q |
155 |
gcttcctgagtggttatcaactatgatttgt |
185 |
Q |
| |
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||||||||||||| ||||||| | |||||| |
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| T |
29752065 |
acttcctgagtggtcatcaactttcatttgt |
29752095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 55 - 185
Target Start/End: Complemental strand, 29601329 - 29601199
Alignment:
| Q |
55 |
ttgaatctttgccacaacttgtgagttttcctgaatggttgaaaggatgtgccgacacattaaacaccttggtaattgatggctgtgaaaatcttgatga |
154 |
Q |
| |
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||||||| |||||| || | ||||||||||| |||||||| |||||||||| ||||||||| ||| ||| | |||| | ||||||||||||||| | |
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| T |
29601329 |
ttgaatccttgccagaattgttgagttttcctcaatggttgcaaggatgtgcggacacattacacagcttatttattggtcactgtgaaaatcttgagaa |
29601230 |
T |
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| Q |
155 |
gcttcctgagtggttatcaactatgatttgt |
185 |
Q |
| |
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||||||||||||| ||||||| | |||||| |
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| T |
29601229 |
acttcctgagtggtcatcaactttcatttgt |
29601199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 42 - 176
Target Start/End: Original strand, 29744906 - 29745040
Alignment:
| Q |
42 |
aagttgctaagtcttgaatctttgccacaacttgtgagttttcctgaatggttgaaaggatgtgccgacacattaaacaccttggtaattgatggctgtg |
141 |
Q |
| |
|
||||| ||| || |||| |||||||||||| | ||||||||||| ||| ||| |||||||||| ||||||||| ||||||| |||| || ||||| |
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| T |
29744906 |
aagttactatgtattgattctttgccacaattgttgagttttcctcaatcattgcaaggatgtgcagacacattacacaccttatctattgctgactgtg |
29745005 |
T |
|
| Q |
142 |
aaaatcttgatgagcttcctgagtggttatcaact |
176 |
Q |
| |
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|||||||||| | ||||||||||||| ||||||| |
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| T |
29745006 |
aaaatcttgagaaacttcctgagtggtcatcaact |
29745040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 183
Target Start/End: Original strand, 35159088 - 35159214
Alignment:
| Q |
57 |
gaatctttgccacaacttgtgagttttcctgaatggttgaaaggatgtgccgacacattaaacaccttggtaattgatggctgtgaaaatcttgatgagc |
156 |
Q |
| |
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||||||||||||||||| || ||||||||| ||| || |||||| || |||||||| | |||||||||||| || ||||| ||||| | || | |
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| T |
35159088 |
gaatctttgccacaactgctggcttttcctgagtggctgcaaggatctgtgaacacattacagtccttggtaattgttgattgtgaccatcttaaggatc |
35159187 |
T |
|
| Q |
157 |
ttcctgagtggttatcaactatgattt |
183 |
Q |
| |
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||||||||||| | ||||||||||||| |
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| T |
35159188 |
ttcctgagtggctgtcaactatgattt |
35159214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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