View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13259_high_1 (Length: 891)

Name: NF13259_high_1
Description: NF13259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13259_high_1
NF13259_high_1
[»] chr1 (2 HSPs)
chr1 (13-875)||(5161139-5162001)
chr1 (691-866)||(5158212-5158380)


Alignment Details
Target: chr1 (Bit Score: 755; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 755; E-Value: 0
Query Start/End: Original strand, 13 - 875
Target Start/End: Complemental strand, 5162001 - 5161139
Alignment:
Q  13 tgaaaacagttccagcgaatatgaccggtcaatcgacacatgaacaaagacctgtcattagttgtttccataagctctagcagacaatctaaacaaaaaa 112  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||| ||||||    
T  5162001 tgaaaacagttccagcgaatatgatcggtcaatcgacacatgaacaaagacctatcattagttgtttccataagctctagcagacagtccaaaaaaaaaa 5161902  T
Q  113 ttgtaatagatgtttatagattaattccattttaaagaaattaannnnnnnn-gttaagtagtccaatgattgaaatctcaccttttaaggtgaataagt 211  Q
     |||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||    
T  5161901 ctgtaatagatgtttatagattaattccattttaaagaaattaatttttttttgttaagtagtccaatgattgaaatctcaccttttaaggtgaataagt 5161802  T
Q  212 gggaaatacggattcgcaccccaacactgcatatataatgcaatctccannnnnnnctctcatgttctctaatgtgtcatgtcatcaatctcatccttaa 311  Q
    |||||||||||||||| |||| | ||| |||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||    
T  5161801 gggaaatacggattcgaacccga-caccgcatatataatgcaatctccatttttttctctcatgttctctaatgtgtcatgtcatcaatctcatccttaa 5161703  T
Q  312 actttgtcatatctaaaactcaccttttttattcaattgtgtagattccaccattctctcatcaacaaagataatccattcccaataggtagaagcaaaa 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5161702 actttgtcatatctaaaactcaccttttttattcaattgtgtagattccaccattctctcatcaacaaagataatccattcccaataggtagaagcaaaa 5161603  T
Q  412 agcaagacattgctttccagttcattttctgaaattatacatttgtattgcacgatttaccaaaagcacatatctggaggaacaaaatttccaaactata 511  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  5161602 agcaagacattgctttccagttcattttctgaaattatacatttgtattgcacgatttaccaaaagcacatatctggatgaacaaaatttccaaactata 5161503  T
Q  512 gaaagtaaaagtagactttgaaaaagggtgccttctatggtgagagagtgtttcatatctcgcacggcatgggagtgagcttatgctatatccgtccctc 611  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5161502 gaaagtaaaagtagactttgaaaaagggtgccttctatggtgagagagtgtttcatatctcgcacggcatgggagtgagcttatgctatatccgtccctc 5161403  T
Q  612 aactcattcctctccattatgcattttttatgtaaaggtggatatgaatgtcacatagaagagccgagaggagggacagacagaatatttcattgtctag 711  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5161402 aactcattcctctccattatgcattttttatgtaaaggtggatatgaatgtcacatagaagagccgagaggagggacagacagaatatttcattgtctag 5161303  T
Q  712 tttaaaaacaaattgtacatatgaaacaattgcactcaagttcctgtaaatcatcttcgggacaagggacaaaggaagcacgctgtgtatagaatcgaac 811  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  5161302 tttaaaaacaaattgtacatatgaaacaattgcacttaagttcctgtaaatcatcttcgggacaaggtacaaaggaagcacgctgtgtatagaatcgaac 5161203  T
Q  812 tggacctgtcattgatactgtaacacaagaaaagaaaccaatcaggcaaatcgatcttccaaac 875  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5161202 tggacctgtcattgatactgtaacacaagaaaagaaaccaatcaggcaaatcgatcttccaaac 5161139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 691 - 866
Target Start/End: Complemental strand, 5158380 - 5158212
Alignment:
Q  691 acagaatatttcattgtctagtttaaaaacaaattgtacatatgaaacaattgcactcaagttcctgtaaatcatcttcgggacaagggacaaaggaagc 790  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||       ||||||    
T  5158380 acagaatatttcattgtctagtataaaaacaaattgtacaaatgaaacaattgcactcaagttcctgtaaatcatcttcccgacaag-------ggaagc 5158288  T
Q  791 acgctgtgtatagaatcgaactggacctgtcattgatactgtaacacaagaaaagaaaccaatcaggcaaatcgat 866  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  5158287 acgctgtgtatagaatcggactggatctgtcattgatactgtaacacaagaaaagaaaccaatcaggcacatcgat 5158212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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