View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13259_high_16 (Length: 355)
Name: NF13259_high_16
Description: NF13259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13259_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 19 - 349
Target Start/End: Complemental strand, 30708833 - 30708499
Alignment:
| Q |
19 |
aacaagcataggttctggaaccatatatgctgcgtgcaaacgtaaacttgaatgtatcatttatgtcttcatttgttcaaacatgatattttttaaagga |
118 |
Q |
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| T |
30708833 |
aacaagcataggttctggaaccatatatgctgcgtgcaaacgtaaacttgaatgtatcatttatgtc---atttgttcaaacatgatattttttaaagga |
30708737 |
T |
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| Q |
119 |
gtttactaaagtgattcacgacgatgttttctttggcctgctgtgtttgtgtagatggtaggtgtgt----ctgtgtatggtatggaggttttcctgcta |
214 |
Q |
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| T |
30708736 |
gtttactaaagtgattcacgacgatgttttctttggcctgctgtgtttgtgtagatggtaggtgtgtctgtctgtgtatggtatggaggttttcctgcta |
30708637 |
T |
|
| Q |
215 |
acacgggctgactctttaaccgctgatg---aatcaaaaacatatctgttactgtaatgtcagtgcgatcaccagtagagtttatcttccgattacggtt |
311 |
Q |
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| T |
30708636 |
acacaggctgactctttaaccactgatgaataatcaaaaacatatctgttactgtaatgtcagtgtgatcacctgtagagtttatcttccgattacggtt |
30708537 |
T |
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| Q |
312 |
gatttctaacttagagtctgtaaaggaagtattatcta |
349 |
Q |
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| T |
30708536 |
gattgctaacttagagtctgtaaatgaagtattatcta |
30708499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 282
Target Start/End: Complemental strand, 30705439 - 30705395
Alignment:
| Q |
238 |
tgatgaatcaaaaacatatctgttactgtaatgtcagtgcgatca |
282 |
Q |
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| T |
30705439 |
tgatgaatcaaaaacatatctgtaactgtactgtcactgtgatca |
30705395 |
T |
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