View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13259_high_20 (Length: 321)
Name: NF13259_high_20
Description: NF13259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13259_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 39625401 - 39625720
Alignment:
| Q |
1 |
tcgatatcctcgacacgtgattcacctgtttcaaatactaccatccaactctttgcaataccctttcgtttacttcctctcactgtcgccaccattgtcg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
39625401 |
tcgatatcctcgacacgtgattcacctgtttcaaatactaccatccaactctttgcaatacccttttgtttacttcctctcactgtcgccaccattgtcg |
39625500 |
T |
|
| Q |
101 |
ctg---------------ctttttccttctcttctttactcaaccttcccatcgcacatcaatcttaatcaattccgatgcaatatttctctgtttaatt |
185 |
Q |
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||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
39625501 |
ctgccatccctactgctgctttttccttctcttctttactcaacattcccatcgcacatcaatcttaatcaattccgatgcaatatttctctg-----tt |
39625595 |
T |
|
| Q |
186 |
tgtaagctaatactaattttgatgaataactaggtctttcgatcttagtttaaatttccttaaatag-ttgttaggtgattactggttagttatgataac |
284 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
39625596 |
tgtaagctaatactaattttgatgaataactaggtctttcgatcttagtttaaatttccttaaatagtttgttaggtgattactggttagttatgataac |
39625695 |
T |
|
| Q |
285 |
actagaacttctttttccctatatt |
309 |
Q |
| |
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|||||||||||||||| |||||||| |
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| T |
39625696 |
actagaacttcttttttcctatatt |
39625720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 39634951 - 39635270
Alignment:
| Q |
1 |
tcgatatcctcgacacgtgattcacctgtttcaaatactaccatccaactctttgcaataccctttcgtttacttcctctcactgtcgccaccattgtcg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
39634951 |
tcgatatcctcgacacgtgattcacctgtttcaaatactaccatccaactctttgcaatacccttttgtttacttcctctcactgtcgccaccattgtcg |
39635050 |
T |
|
| Q |
101 |
ctg---------------ctttttccttctcttctttactcaaccttcccatcgcacatcaatcttaatcaattccgatgcaatatttctctgtttaatt |
185 |
Q |
| |
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||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
39635051 |
ctgccatccctactgctgctttttccttctcttctttactcaacattcccatcgcacatcaatcttaatcaattccgatgcaatatttctctg-----tt |
39635145 |
T |
|
| Q |
186 |
tgtaagctaatactaattttgatgaataactaggtctttcgatcttagtttaaatttccttaaatag-ttgttaggtgattactggttagttatgataac |
284 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
39635146 |
tgtaagctaatactaattttgatgaataactaggtctttcgatcttagtttaaatttccttaaatagtttgttaggtgattactggttagttatgataac |
39635245 |
T |
|
| Q |
285 |
actagaacttctttttccctatatt |
309 |
Q |
| |
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|||||||||||||||| |||||||| |
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|
| T |
39635246 |
actagaacttcttttttcctatatt |
39635270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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