View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13259_high_30 (Length: 215)
Name: NF13259_high_30
Description: NF13259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13259_high_30 |
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Alignment Details
Target: chr3 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 9019691 - 9019505
Alignment:
| Q |
1 |
aaaaacgaataagctataacactaagatgctaataattatttttagacaaaagatgataaaatcctttttatttttacataacacctacaatgaataatg |
100 |
Q |
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| T |
9019691 |
aaaaacgaataagctataacactaagatgctaataattatttttagacaaaggatgataaaatcctttttatttttacataacacctacaatgaataatg |
9019592 |
T |
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| Q |
101 |
aaatatgataataaatattctagaaatattctctcgatctcaagtatagtacacaagaaaatgtgtaggtagatcaactcaaaataatcaacaataac |
198 |
Q |
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| T |
9019591 |
aaataggataataaa-----------tattatctcgctctcaagtatagtacacaagaaaatgtgtaggtagatcaactcataataatcaacaataac |
9019505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 117
Target Start/End: Complemental strand, 9023786 - 9023738
Alignment:
| Q |
69 |
ttatttttacataacacctacaatgaataatgaaatatgataataaata |
117 |
Q |
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|||||||| | ||||||||||||| ||||||||||||| | |||||||| |
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| T |
9023786 |
ttatttttccttaacacctacaataaataatgaaatataaaaataaata |
9023738 |
T |
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