View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13259_high_5 (Length: 638)

Name: NF13259_high_5
Description: NF13259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13259_high_5
NF13259_high_5
[»] chr4 (4 HSPs)
chr4 (16-638)||(54634657-54635279)
chr4 (161-250)||(49026007-49026096)
chr4 (164-250)||(41728905-41728991)
chr4 (161-197)||(30868288-30868324)
[»] chr8 (1 HSPs)
chr8 (159-245)||(37147839-37147925)
[»] chr1 (1 HSPs)
chr1 (269-316)||(21915021-21915068)
[»] chr3 (1 HSPs)
chr3 (191-250)||(7196070-7196129)
[»] chr2 (1 HSPs)
chr2 (277-319)||(37034754-37034796)
[»] scaffold0154 (1 HSPs)
scaffold0154 (161-201)||(36422-36462)
[»] chr6 (1 HSPs)
chr6 (159-239)||(28751413-28751493)


Alignment Details
Target: chr4 (Bit Score: 619; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 619; E-Value: 0
Query Start/End: Original strand, 16 - 638
Target Start/End: Original strand, 54634657 - 54635279
Alignment:
Q  16 atttcttcatactattcttctgcaattcataattccagcaatattcgtttcattattatctccaaaatgtagatttttgttagagaataatatattgagg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54634657 atttcttcatactattcttctgcaattcataattccagcaatattcgtttcattattatctccaaaatgtagatttttgttagagaataatatattgagg 54634756  T
Q  116 gaaatgctattatgtgccataaccatatcttagtatcaaagatagatagaaattatatattggaaattgtttcaatttatttctcagaattttggaaatt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54634757 gaaatgctattatgtgccataaccatatcttagtatcaaagatagatagaaattatatattggaaattgtttcaatttatttctcagaattttggaaatt 54634856  T
Q  216 attttttcgcaattaatacttactatttgtagaattaactgtctaattttcaatgtcagtgtaaaactagtttacgctgacaatgcatctctccttttct 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54634857 attttttcgcaattaatacttactatttgtagaattaactgtctaattttcaatgtcagtgtaaaactagtttacgctgacaatgcatctctccttttct 54634956  T
Q  316 cattggaaaaataaattaaaattaacattggtgtgtgaatgtagtttttgattgctgtttcacaacggaagcttggaatgaagagaagtataaagtgtat 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54634957 cattggaaaaataaattaaaattaacattggtgtgtgaatgtagtttttgattgctgtttcacaacggaagcttggaatgaagagaagtataaagtgtat 54635056  T
Q  416 atggatggtatagtaggtcagcttagagagaatgtgcctgatgcttctattttggttttcaattttcgcgaggaagagaccaagagtttgatggcaaata 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54635057 atggatggtatagtaggtcagcttagagagaatgtgcctgatgcttctattttggttttcaattttcgcgaggaagagaccaagagtttgatggcaaata 54635156  T
Q  516 taatatctgagtatgacattactataatggattatcctaggcattatgaaggttgtcctgtgcttaaaatggagctcattcaccactttttaaggtcttg 615  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  54635157 taatatctgagtatgacattactataatggattatcctaggcattatgaaggttgtcctgtgcttaaaatggagctcattcaccactttttaaggtctag 54635256  T
Q  616 tgaaagttggctttcacttggtc 638  Q
    |||||||||||||||||||||||    
T  54635257 tgaaagttggctttcacttggtc 54635279  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 161 - 250
Target Start/End: Original strand, 49026007 - 49026096
Alignment:
Q  161 atagaaattatatattggaaattgtttcaatttatttctcagaattttggaaattattttttcgcaattaatacttactatttgtagaat 250  Q
    |||||| ||||||||||||||||||   ||||||||||||| ||  ||| ||||||||||||| |||| ||||||| |||||||| ||||    
T  49026007 atagaagttatatattggaaattgtgcaaatttatttctcaaaaaattgaaaattattttttctcaataaatacttgctatttgtggaat 49026096  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 164 - 250
Target Start/End: Complemental strand, 41728991 - 41728905
Alignment:
Q  164 gaaattatatattggaaattgtttcaatttatttctcagaattttggaaattattttttcgcaattaatacttactatttgtagaat 250  Q
    |||||||| ||||||||||||| ||||||||||||||| || |||| |||| | |||||| | || |||||||  ||||||| ||||    
T  41728991 gaaattatctattggaaattgtgtcaatttatttctcaaaaatttgaaaataaatttttcccgataaatacttgttatttgtggaat 41728905  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 30868324 - 30868288
Alignment:
Q  161 atagaaattatatattggaaattgtttcaatttattt 197  Q
    |||||||||| |||||||||||||| |||||||||||    
T  30868324 atagaaattacatattggaaattgtgtcaatttattt 30868288  T

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Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 245
Target Start/End: Complemental strand, 37147925 - 37147839
Alignment:
Q  159 agatagaaattatatattggaaattgtttcaatttatttctcagaattttggaaattattttttcgcaattaatacttactatttgt 245  Q
    |||| ||||||| ||||||||||||||  |||||||||||||| | |||||  ||||| |||||  |||| ||||||||||||||||    
T  37147925 agatggaaattacatattggaaattgtggcaatttatttctcaaacttttgataattaatttttttcaataaatacttactatttgt 37147839  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 269 - 316
Target Start/End: Original strand, 21915021 - 21915068
Alignment:
Q  269 tgtcagtgtaaaactagtttacgctgacaatgcatctctccttttctc 316  Q
    |||||||||||||||||||||| |||||||||||| || |||||||||    
T  21915021 tgtcagtgtaaaactagtttacactgacaatgcatatccccttttctc 21915068  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 191 - 250
Target Start/End: Complemental strand, 7196129 - 7196070
Alignment:
Q  191 tttatttctcagaattttggaaattattttttcgcaattaatacttactatttgtagaat 250  Q
    ||||||||| | ||||||| |||||| |||||| |||| |||||||||||||||| ||||    
T  7196129 tttatttcttaaaattttgaaaattactttttctcaataaatacttactatttgtggaat 7196070  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 277 - 319
Target Start/End: Original strand, 37034754 - 37034796
Alignment:
Q  277 taaaactagtttacgctgacaatgcatctctccttttctcatt 319  Q
    ||||||||||||||  ||||||||||| |||||||||||||||    
T  37034754 taaaactagtttacattgacaatgcatgtctccttttctcatt 37034796  T

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Target: scaffold0154 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 161 - 201
Target Start/End: Complemental strand, 36462 - 36422
Alignment:
Q  161 atagaaattatatattggaaattgtttcaatttatttctca 201  Q
    ||||||||||| ||||||||||||| | |||||||||||||    
T  36462 atagaaattatgtattggaaattgtgttaatttatttctca 36422  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 159 - 239
Target Start/End: Original strand, 28751413 - 28751493
Alignment:
Q  159 agatagaaattatatattggaaattgtttcaatttatttctcagaattttggaaattattttttcgcaattaatacttact 239  Q
    ||||| ||||||| ||||| ||||||| ||||| ||||| | | ||||||| ||||||||||||  |||  ||||||||||    
T  28751413 agatataaattatgtattgaaaattgtgtcaatctatttttaaaaattttgaaaattattttttttcaagaaatacttact 28751493  T

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