View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13259_low_11 (Length: 428)

Name: NF13259_low_11
Description: NF13259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13259_low_11
NF13259_low_11
[»] chr2 (1 HSPs)
chr2 (11-409)||(25078466-25078871)
[»] chr8 (2 HSPs)
chr8 (42-215)||(3185609-3185786)
chr8 (43-124)||(14242772-14242853)
[»] chr1 (1 HSPs)
chr1 (46-167)||(25009324-25009445)
[»] chr6 (2 HSPs)
chr6 (73-124)||(29659180-29659231)
chr6 (72-138)||(5959763-5959829)
[»] chr5 (1 HSPs)
chr5 (45-140)||(28144337-28144432)
[»] scaffold0123 (1 HSPs)
scaffold0123 (45-117)||(43766-43838)
[»] chr7 (3 HSPs)
chr7 (71-166)||(17759059-17759154)
chr7 (74-119)||(20306494-20306539)
chr7 (67-119)||(38709371-38709423)
[»] chr3 (3 HSPs)
chr3 (131-177)||(28438171-28438217)
chr3 (70-119)||(21894051-21894100)
chr3 (73-122)||(43461146-43461195)


Alignment Details
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 11 - 409
Target Start/End: Complemental strand, 25078871 - 25078466
Alignment:
Q  11 ttattcttacaagccgatattttgaccattggaagtgtaactcgttatcacattgtttcttgaatgtatcgaaattgcaaacacatcgacgagtgtctct 110  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  25078871 ttattcttacaagccgatattttgatcattggaagtgtaactcgttatcacattgtttcttgaatgtatcgaaattgcaaacacatccacgagtgtctct 25078772  T
Q  111 tttattagtcatttcagtcatcgaatctatctttaagtagtcaatttagtcctcaaacttgttttccgtctgacaatatagtccataaaattgctaacaa 210  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25078771 tttattagtcatttcagtcatcgaatctatctttaagtagtcgatttagtcctcaaacttgttttccgtctgacaatatagtccataaaattgctaacaa 25078672  T
Q  211 aagagatgtatttacaatttcgatacatttatagaccgtaa-aacaatgcaccacatattcaaggaga------gttgtttgtcaaattttatttacttc 303  Q
    ||||||||||||||||||||||||||||| ||||||| |||  |||||||||||||||||||| || |      |||||||||| |||||||||||||||    
T  25078671 aagagatgtatttacaatttcgatacattcatagaccataatgacaatgcaccacatattcaacgacaaaaattgttgtttgtccaattttatttacttc 25078572  T
Q  304 ccaatgtgacagactataaagcagcgacaaacaccaaacataacactaatatacggatgatttcttaagaaaatagaaatgattgaatgaaattactagt 403  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||| |||    
T  25078571 ccaatgtgacagactataaagcagcgacaaacaccaaacataacactaatgtacggatgattacttaagaaaatagaaatgattgaataaaattacgagt 25078472  T
Q  404 gttggg 409  Q
    ||||||    
T  25078471 gttggg 25078466  T

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Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 42 - 215
Target Start/End: Original strand, 3185609 - 3185786
Alignment:
Q  42 gaagtgtaactcgttatcacattgtttcttgaatgtatcgaa-----attgcaaacacatcgacgagtgtctcttttattagtcatttcagtcatcgaat 136  Q
    ||||||||||||| | |||||||| | |||||||||||| ||     ||| |||||||||| || ||||||||||| |||||||||||||||  ||||||    
T  3185609 gaagtgtaactcgctgtcacattggtccttgaatgtatcaaatcaaaattacaaacacatccacaagtgtctctttcattagtcatttcagttctcgaat 3185708  T
Q  137 ctatctttaagtagtcaatttagtcctcaaacttgttttccgtctgacaatatagtccataaaattgctaacaaaagag 215  Q
     | | |||| ||||||  ||| |||||| ||  |||||| ||| || |||| |||||||||||||| |||||| |||||    
T  3185709 atgtttttaggtagtc-gttttgtcctcgaatgtgtttttcgtttgtcaatttagtccataaaatttctaacagaagag 3185786  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 43 - 124
Target Start/End: Complemental strand, 14242853 - 14242772
Alignment:
Q  43 aagtgtaactcgttatcacattgtttcttgaatgtatcgaaattgcaaacacatcgacgagtgtctcttttattagtcattt 124  Q
    |||||||||||| | |||||||| ||| |||||||| | ||| || ||||||||| ||  ||||||||||||||||||||||    
T  14242853 aagtgtaactcgctgtcacattggttcctgaatgtaccaaaaatgtaaacacatccacatgtgtctcttttattagtcattt 14242772  T

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Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 46 - 167
Target Start/End: Complemental strand, 25009445 - 25009324
Alignment:
Q  46 tgtaactcgttatcacattgtttcttgaatgtatcgaaattgcaaacacatcgacgagtgtctcttttattagtcatttcagtcatcgaatctatcttta 145  Q
    |||||||| || |||||||| || || | |||||| ||||| |||||||||| || ||| ||| |||||||||||||||   ||||| ||| ||| ||||    
T  25009445 tgtaactcattctcacattggttttttattgtatcaaaattacaaacacatctacaagtatcttttttattagtcattttgctcatcaaatatattttta 25009346  T
Q  146 agtagtcaatttagtcctcaaa 167  Q
     |||||||||||||||||||||    
T  25009345 ggtagtcaatttagtcctcaaa 25009324  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 73 - 124
Target Start/End: Original strand, 29659180 - 29659231
Alignment:
Q  73 aatgtatcgaaattgcaaacacatcgacgagtgtctcttttattagtcattt 124  Q
    |||||||| |||||||||||||||| || |||||||||||||||||||||||    
T  29659180 aatgtatcaaaattgcaaacacatccactagtgtctcttttattagtcattt 29659231  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 138
Target Start/End: Complemental strand, 5959829 - 5959763
Alignment:
Q  72 gaatgtatcgaaattgcaaacacatcgacgagtgtctcttttattagtcatttcagtcatcgaatct 138  Q
    |||||||||||||||||||| ||||| || | |||||||||||| ||| ||||  ||| ||||||||    
T  5959829 gaatgtatcgaaattgcaaatacatccacaaatgtctcttttatcagttattttggtcctcgaatct 5959763  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 45 - 140
Target Start/End: Complemental strand, 28144432 - 28144337
Alignment:
Q  45 gtgtaactcgttatcacattgtttcttgaatgtatcgaaattgcaaacacatcgacgagtgtctcttttattagtcatttcagtcatcgaatctat 140  Q
    |||||||||||  |||||||| | | | |||| ||| |||||||||||||||| ||| ||||||||||||| ||||||||| ||| | ||||||||    
T  28144432 gtgtaactcgtagtcacattgatacctaaatgaatcaaaattgcaaacacatccacgcgtgtctcttttatcagtcatttcggtccttgaatctat 28144337  T

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Target: scaffold0123 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 45 - 117
Target Start/End: Complemental strand, 43838 - 43766
Alignment:
Q  45 gtgtaactcgttatcacattgtttcttgaatgtatcgaaattgcaaacacatcgacgagtgtctcttttatta 117  Q
    |||||||| ||| |||||||| | ||||||| ||||||||||||||||||||  |||||||||| ||| ||||    
T  43838 gtgtaactggttgtcacattggtccttgaatctatcgaaattgcaaacacattcacgagtgtctttttaatta 43766  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 166
Target Start/End: Original strand, 17759059 - 17759154
Alignment:
Q  71 tgaatgtatcgaaattgcaaacacatcgacgagtgtctcttttattagtcatttcagtcatcgaatctatctttaagtagtcaatttagtcctcaa 166  Q
    |||||||||| |||||||||| ||||  |  ||||||| |||||||||| ||||  ||||| ||||   | ||||| |||||||||||||||||||    
T  17759059 tgaatgtatcaaaattgcaaagacattcataagtgtctgttttattagttattttggtcattgaattcgtttttaaatagtcaatttagtcctcaa 17759154  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 119
Target Start/End: Original strand, 20306494 - 20306539
Alignment:
Q  74 atgtatcgaaattgcaaacacatcgacgagtgtctcttttattagt 119  Q
    |||||||||||||||||| ||||  ||| |||||||||||||||||    
T  20306494 atgtatcgaaattgcaaatacattcacgtgtgtctcttttattagt 20306539  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 119
Target Start/End: Original strand, 38709371 - 38709423
Alignment:
Q  67 ttcttgaatgtatcgaaattgcaaacacatcgacgagtgtctcttttattagt 119  Q
    |||||||||| |||||||||||||||| ||  || ||| ||||||||||||||    
T  38709371 ttcttgaatgcatcgaaattgcaaacatattcacaagtatctcttttattagt 38709423  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 131 - 177
Target Start/End: Complemental strand, 28438217 - 28438171
Alignment:
Q  131 tcgaatctatctttaagtagtcaatttagtcctcaaacttgttttcc 177  Q
    |||||||||| |||| |||||||||||||||||||||  ||||||||    
T  28438217 tcgaatctatttttaggtagtcaatttagtcctcaaatatgttttcc 28438171  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 119
Target Start/End: Complemental strand, 21894100 - 21894051
Alignment:
Q  70 ttgaatgtatcgaaattgcaaacacatcgacgagtgtctcttttattagt 119  Q
    ||||||||||||||||||||||  |||  ||| |||||||||||||||||    
T  21894100 ttgaatgtatcgaaattgcaaatgcattcacgtgtgtctcttttattagt 21894051  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 122
Target Start/End: Original strand, 43461146 - 43461195
Alignment:
Q  73 aatgtatcgaaattgcaaacacatcgacgagtgtctcttttattagtcat 122  Q
    |||||||| |||||||||||||||| || || ||||| ||||||||||||    
T  43461146 aatgtatcaaaattgcaaacacatccacaagcgtctcatttattagtcat 43461195  T

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