View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13259_low_12 (Length: 419)
Name: NF13259_low_12
Description: NF13259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13259_low_12 |
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| [»] scaffold2086 (1 HSPs) |
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| [»] scaffold1996 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 7 - 401
Target Start/End: Complemental strand, 35776784 - 35776394
Alignment:
| Q |
7 |
tcgaagaatatgaggtgccaaaattacaaaactgtgatacttaagagaccgaaagtacactcaaattaatcttctaatgtaaaatgtcttcaactaaaag |
106 |
Q |
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||||| || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35776784 |
tcgaaaaaaatgaggtgccaaaattacaaaactatgatacttaagagaccgaaagtacactcaaattaatcttctaatgtaaaatgtcttcaactaaaag |
35776685 |
T |
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| Q |
107 |
attttaaattattttcagtgacaattatcttgagnnnnnnnnnnnnnnnnnntatttattaaatatttataaacttataacgaacaaattatagaatttg |
206 |
Q |
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|||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
35776684 |
attttaaattatcttcagtgacaattatcttca----ttttttttttttaaatatttattaaatatttataaacttataacaaacaaattatagaatttg |
35776589 |
T |
|
| Q |
207 |
cttgcagcaatattgagataaggttcactatatctttgttctttctgaccgacctccaagcagggaaaatctatatcaccaccgccattgtacaagtttg |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
35776588 |
cttgcagcaatattgagataaggttcactatatctttgttctttctgaccgacctccaagcagggcaaatctatatcaccaccgccattgtacaagtttg |
35776489 |
T |
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| Q |
307 |
tctcgtataaattcacaaacattgtaacaatagtgatatttgaacaaaaatggattcttattctccctctacgcatatccatcaaaagcctcatg |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
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| T |
35776488 |
tctcgtataaattcacaaacattgtaacaatagtgatatttgaacaaaaatggattcttattctccctctacgcatattcaacaaaagcctcatg |
35776394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2086 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: scaffold2086
Description:
Target: scaffold2086; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 16 - 117
Target Start/End: Original strand, 923 - 1023
Alignment:
| Q |
16 |
atgaggtgccaaaattacaaaactgtgatacttaagagaccgaaagtacactcaaattaatcttctaatgtaaaatgtcttcaactaaaagattttaaat |
115 |
Q |
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|||| |||||||||||||| || | ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||| |
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| T |
923 |
atgatgtgccaaaattacacaaatatgatacttaagaggccgaaagtacactcaaattaatcttc-aatgtaaaatgtcttccactaaaatattttaaat |
1021 |
T |
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| Q |
116 |
ta |
117 |
Q |
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|| |
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| T |
1022 |
ta |
1023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1996 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: scaffold1996
Description:
Target: scaffold1996; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 16 - 117
Target Start/End: Original strand, 923 - 1023
Alignment:
| Q |
16 |
atgaggtgccaaaattacaaaactgtgatacttaagagaccgaaagtacactcaaattaatcttctaatgtaaaatgtcttcaactaaaagattttaaat |
115 |
Q |
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|||| |||||||||||||| || | ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||| |
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| T |
923 |
atgatgtgccaaaattacacaaatatgatacttaagaggccgaaagtacactcaaattaatcttc-aatgtaaaatgtcttccactaaaatattttaaat |
1021 |
T |
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| Q |
116 |
ta |
117 |
Q |
| |
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|| |
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|
| T |
1022 |
ta |
1023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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