View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13259_low_13 (Length: 417)
Name: NF13259_low_13
Description: NF13259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13259_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 150 - 412
Target Start/End: Complemental strand, 45039939 - 45039677
Alignment:
| Q |
150 |
ctataatgaaggccgtcgatctagcggtgttttagcacttcctccaccatcagcaccagaacaattggaacatcagcaactccaacactacaatgataca |
249 |
Q |
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| T |
45039939 |
ctataatgaaggccgtcgatctagcggtgttatagcacttcctccaccatcagcaccagaacaattggaacatcagcaactccaacactacaatgataca |
45039840 |
T |
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| Q |
250 |
aataacaattgcgttaatatgtgaccaattgttggtataagttttacattatagcttatctgaatttttgctttctgcatttttcatttcgtacttcaga |
349 |
Q |
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| T |
45039839 |
aataacaattgcgttaatatgtgaccaattgttggtataagttttacattatagcttatctgaatttttgctttctgcattttccatttcgtacttgaga |
45039740 |
T |
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| Q |
350 |
tctttttggttaacatagcagcaattggtattcatttaactttgtagcctcatctgtgctcct |
412 |
Q |
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| T |
45039739 |
tctttttggttaacatagcagcaattagtattcatttaactttgtagcctcatttgtgatcct |
45039677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 19 - 152
Target Start/End: Complemental strand, 45040101 - 45039968
Alignment:
| Q |
19 |
tatcattcaaatttctggggcaattgattcaaataagcttttgactgaaataacaaaagctggaaaacatgctagactcattgttgcagatgatgttggc |
118 |
Q |
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| T |
45040101 |
tatcattcgaatttctggggcaattgatccaaataagctcttgactgaaataacaaaagctggaaaacatgctagactcattgttgcagatgatgttggc |
45040002 |
T |
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| Q |
119 |
ggccgtggtggtggacactctcactttcacccta |
152 |
Q |
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| T |
45040001 |
ggccgtggtggtggacactctcactttcacccta |
45039968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 179 - 352
Target Start/End: Complemental strand, 45043428 - 45043255
Alignment:
| Q |
179 |
ttttagcacttcctccaccatcagcaccagaacaattggaacatcagcaactccaacactacaatgatacaaataacaattgcgttaatatgtgaccaat |
278 |
Q |
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| T |
45043428 |
ttttagcactgcctccaccatctgcatcagaacaattgcaacatcaacaactccaacactacaatgatacaaataacaattgtgttattatgtgaccaat |
45043329 |
T |
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| Q |
279 |
tg-ttggtataagttttacattatagcttatctgaatttttgctttctgcatttttcatttcgtacttcagatct |
352 |
Q |
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| T |
45043328 |
tgattagtataagttttacattatagtttatctgaacttttg-gttctgcattttccattccgtacttcagatct |
45043255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 23 - 121
Target Start/End: Complemental strand, 45043795 - 45043697
Alignment:
| Q |
23 |
attcaaatttctggggcaattgattcaaataagcttttgactgaaataacaaaagctggaaaacatgctagactcattgttgcagatgatgttggcggc |
121 |
Q |
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|||| ||||||||| ||||| ||| ||| |||||||||||| ||||||||||||||||| ||||||||| |||||||| ||| ||| |||||||||| |
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| T |
45043795 |
attcgaatttctggagcaatagatccaagtaagcttttgaccgaaataacaaaagctgggaaacatgctgaactcattgctgctaatgttgttggcggc |
45043697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 356
Target Start/End: Complemental strand, 45047292 - 45047230
Alignment:
| Q |
295 |
acattatagcttatctgaatttttgctttctgcat-ttttcatttcgtacttcagatcttttt |
356 |
Q |
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| T |
45047292 |
acattatagtttatttgaatatttgctttctgcatttttttatttcgtactccggatcttttt |
45047230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 353
Target Start/End: Original strand, 38346495 - 38346536
Alignment:
| Q |
312 |
aatttttgctttctgcatttttcatttcgtacttcagatctt |
353 |
Q |
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| T |
38346495 |
aatttttgctttctgcattttttatttagtacttcaaatctt |
38346536 |
T |
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